View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_13 (Length: 468)
Name: NF11095_high_13
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 405; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 405; E-Value: 0
Query Start/End: Original strand, 18 - 455
Target Start/End: Complemental strand, 1721045 - 1720608
Alignment:
| Q |
18 |
aataacactaacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggnnnnnnncttgcttgcagtgattgcaaacgag |
117 |
Q |
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| T |
1721045 |
aataacactaacggtacttgcttaaattatcataagttacttagctcaacttcaatgcatactggtggaaaaaaacttgcttgcagtgattgcaaacgag |
1720946 |
T |
|
| Q |
118 |
agtttttagtgttcacagaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagttt |
217 |
Q |
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|||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1720945 |
agtttttagtgtctacaaaaacaactatgtaccgttgcaacaaatgcgaaggtgttagtaaatcaatttcaggttataaacaattcagagaaaatagttt |
1720846 |
T |
|
| Q |
218 |
aagagccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaa |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1720845 |
aagagccaaattcttcaaccaagatcgacaacaaaatgctagtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaatcggtaacaaa |
1720746 |
T |
|
| Q |
318 |
cgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataatt |
417 |
Q |
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| T |
1720745 |
cgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactactgactaataatt |
1720646 |
T |
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| Q |
418 |
ttgcattcccaatagaatccatacgcgtcctcacaggt |
455 |
Q |
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| T |
1720645 |
ttgcattcccaatagaatccatacgcgtcctcacaggt |
1720608 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 209 - 427
Target Start/End: Original strand, 18372697 - 18372915
Alignment:
| Q |
209 |
aaatagtttaagagccaaattcttcaaccaagatcgacaacaaaatgcta--gtaaaaatgcatcaagccattcctctttgttgttgtctacaactacaa |
306 |
Q |
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|||||||||| ||| |||| ||||||||||||| || ||| | ||||| | | |||||||||| |||||||||| | ||||||||||||||| | | |
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| T |
18372697 |
aaatagtttagaagctgaattgttcaaccaagatcaactacacagtgctatagcacaaatgcatcaggccattcctcgtcgttgttgtctacaacaatca |
18372796 |
T |
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| Q |
307 |
tcggtaacaaacgcgcggttctatgtggagttacttacagaagaagacggtacatgctcaagggaaccgttaatgatgttgttaacatgaaaaaactact |
406 |
Q |
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| T |
18372797 |
cccgtaacaagcacatggttctatgtggagtaacttgcag-cgaagatgttacaagctcaa-ggaaccattaatgatgtcgttaacatggaaaatctaac |
18372894 |
T |
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| Q |
407 |
gactaataattttgcattccc |
427 |
Q |
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| ||| |||||||||||||| |
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| T |
18372895 |
ggttaacaattttgcattccc |
18372915 |
T |
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