View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_16 (Length: 448)
Name: NF11095_high_16
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_16 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 16 - 430
Target Start/End: Complemental strand, 39167353 - 39166939
Alignment:
| Q |
16 |
atgaactacgaggtcccagacaaaatctcaatgattggtacaggtatgttggttttatggttgctctataggcaccttattgttcaaaagattgagtgtt |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167353 |
atgaactacgaggtcccagacaaaatctcaatgattggtacaggtatattggttttatggttgctctataggcaccttattgttcaaaagattgagtgtt |
39167254 |
T |
|
| Q |
116 |
attctaaatttgtagaacaatagatgaattaaaacatagtcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaa |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167253 |
attctaaatttgtagaacaatagatgaattaaaacatagtcttcatgggaatgagtgattatattgttttgatcttctgaattataggtacatgccaaaa |
39167154 |
T |
|
| Q |
216 |
ggagcagaagtcgtgcatgctgcgaatccgaatgttcttgtcattctgtctggcttaaattttgacactgacttatcattcattacaaaccagccagtga |
315 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167153 |
ggagcagaagtcgtgcatgctgcgaattcgaatgttcttgtcattctgtctggcttaaattttgacactgacttatcattcattacaaaccagccagtga |
39167054 |
T |
|
| Q |
316 |
agcttacctttaatgggaaactagtatttgaggagcattggtatagctttagtgacagtcaagcatggacattagagaatccaaaccaagtgtgtggaca |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39167053 |
agcttacctttaatgggaaactagtatttgaggagcattggtatagctttagtgacagtcaagcatggacattagagaatccaaaccaagtgtgtggaca |
39166954 |
T |
|
| Q |
416 |
agttacaagtagctt |
430 |
Q |
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||||||||||||||| |
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| T |
39166953 |
agttacaagtagctt |
39166939 |
T |
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