View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_high_19 (Length: 412)
Name: NF11095_high_19
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_19 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 1 - 390
Target Start/End: Original strand, 41034720 - 41035109
Alignment:
| Q |
1 |
tcattttactgatcagagaagcaacaaaaggttcacggagccaaccatatcaagcaatgctggattagttgcagcattgattgcacttcaagacccttct |
100 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
41034720 |
tcattttactgatcagaggagcaacaaaaggttcacggagccaaccatatcaagcaatgctggattagtttcagcattgattgcacttcaagacccttct |
41034819 |
T |
|
| Q |
101 |
aataattcacatgacttgaaaaactcattgtgggaatggatttgatttattattgaaagtcttgcatcaaatttctcttagtggaacagaattgtgagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41034820 |
aataattcacatgacttgaaaaactcattgtgggaatggatttgatttattattgaaagtcttgcatcaaatttctcttagtggaacagaattgtgagga |
41034919 |
T |
|
| Q |
201 |
tatgtgtaggaaaaaagggaagtgtgacaactataattatagcaaatatatttcattggctcatatcatcaacaatttgatggatttaatttttaaatgg |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
41034920 |
tatgtgtaggaaaaaagggaagtgtgacaactataattatagcagatatatttcattggctcatatgatcaacaatttgatggatttaatttttaaatgg |
41035019 |
T |
|
| Q |
301 |
tacttttcatgtcatcaattgtaaagttcagttatttcaggattttgatgcaatgaaggcatgattgttcaatgaacaccataaattact |
390 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41035020 |
tacttttcatgtcatcaattgtaaagttcagttatttcaggattttgatgcaatgaaggcatgattgttcaatgaacaccataaattact |
41035109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University