View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_25 (Length: 327)
Name: NF11095_high_25
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_25 |
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Alignment Details
Target: chr2 (Bit Score: 163; Significance: 5e-87; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 148 - 314
Target Start/End: Complemental strand, 33773627 - 33773461
Alignment:
| Q |
148 |
caggagagagaaaaatcatgaagccatagacatgatagagagtctactaggtgttggtttgaaattcaaccatctaagtcctaaacgttttggtggtggt |
247 |
Q |
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| T |
33773627 |
caggagagagaaaaatcatgaagccatagacatgatagagagtctactaggtgttggtttgaaattcaaccatctaagtcctaaacgttttggtggtggt |
33773528 |
T |
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| Q |
248 |
gttaaagctcttctcagtatctctttactcgccaaacgcttcttcaacctttctcctggtactacat |
314 |
Q |
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| T |
33773527 |
gttaaagctcttctcaatatctctttactcgccaaacgcttcttcaacctttctcctggtactacat |
33773461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 33 - 124
Target Start/End: Complemental strand, 33773748 - 33773657
Alignment:
| Q |
33 |
tacccaattgcaaaaagtgaaactttgtaaacaataaatatatatcatcatctaaattaattggatagttaaacttgtacaatcatccaaac |
124 |
Q |
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| T |
33773748 |
tacccaattgcaaaaaatgaaactttgtaaacaataaatatatatcatcatctaatttaattggatagttaaacttgtacaatcatccaaac |
33773657 |
T |
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