View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11095_high_38 (Length: 245)

Name: NF11095_high_38
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11095_high_38
NF11095_high_38
[»] chr6 (4 HSPs)
chr6 (1-230)||(8294397-8294626)
chr6 (3-230)||(33257131-33257358)
chr6 (52-180)||(845019-845147)
chr6 (93-180)||(870303-870390)
[»] scaffold0428 (1 HSPs)
scaffold0428 (3-230)||(1249-1476)
[»] chr8 (8 HSPs)
chr8 (36-222)||(906004-906190)
chr8 (11-222)||(894453-894664)
chr8 (36-230)||(548693-548887)
chr8 (36-230)||(23423717-23423911)
chr8 (140-223)||(10201853-10201936)
chr8 (140-223)||(10208926-10209009)
chr8 (106-180)||(566303-566377)
chr8 (141-190)||(560446-560495)
[»] scaffold0184 (1 HSPs)
scaffold0184 (52-190)||(15188-15326)
[»] scaffold0078 (2 HSPs)
scaffold0078 (52-190)||(57518-57656)
scaffold0078 (144-186)||(3067-3109)
[»] chr7 (3 HSPs)
chr7 (144-186)||(16566723-16566765)
chr7 (144-186)||(16598897-16598939)
chr7 (134-178)||(48398540-48398584)


Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 8294626 - 8294397
Alignment:
Q  1 aaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagtt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  8294626 aaattctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaatggttttttggaaagaacaaaagaaaatggactagtagtt 8294527  T
Q  101 gcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacg 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8294526 gcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacg 8294427  T
Q  201 gcgtgccgttgattgcatggccattgtttg 230  Q
    ||||||||||||||||||||||||||||||    
T  8294426 gcgtgccgttgattgcatggccattgtttg 8294397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 33257131 - 33257358
Alignment:
Q  3 attctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgc 102  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||| || ||| |||| ||| |    
T  33257131 attctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcgaaagaacaaaagagaagggattagttgttac 33257230  T
Q  103 atcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33257231 atcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacggc 33257330  T
Q  203 gtgccgttgattgcatggccattgtttg 230  Q
    || |||||||||||||||||||||||||    
T  33257331 gttccgttgattgcatggccattgtttg 33257358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 52 - 180
Target Start/End: Complemental strand, 845147 - 845019
Alignment:
Q  52 tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg 151  Q
    ||||||||| ||||||||||||||||||||||  || ||  |||||||| |||  |||||||||||| |||| |||||||||||| | ||||||||||||    
T  845147 tttaccaaatggttttttggaaagaacaaaagggaaaggtttagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtggg 845048  T
Q  152 tttttaagtcattgtggttggagttcaac 180  Q
    ||||||| |||||||||||||| ||||||    
T  845047 tttttaactcattgtggttggaattcaac 845019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 870390 - 870303
Alignment:
Q  93 tagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaac 180  Q
    |||||||| |||  |||||||||||| |||| |||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||    
T  870390 tagtagttccatattgggcaccacaaattgaaattcttggtcatagttcaattggtgggtttttaactcattgtggttggaattcaac 870303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 3 - 230
Target Start/End: Original strand, 1249 - 1476
Alignment:
Q  3 attctagttctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgc 102  Q
    ||||||||||||| ||||||| ||||||||||||||| |||||||||||||||||||| |||||| | |||||||||||||| || ||| |||| ||| |    
T  1249 attctagttctgcttattttaatggacaaaacaatgaaccattagagtatttaccaaacggttttgtcgaaagaacaaaagagaagggattagttgttac 1348  T
Q  103 atcatgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggc 202  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1349 atcatgggcaccacaagttgagattcttggtcatggatcaattggtggttttttaagtcattgtggttggagttcaactttggagagtgtggttaacggc 1448  T
Q  203 gtgccgttgattgcatggccattgtttg 230  Q
    || |||||||||||||||||||||||||    
T  1449 gtaccgttgattgcatggccattgtttg 1476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 127; Significance: 1e-65; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 36 - 222
Target Start/End: Original strand, 906004 - 906190
Alignment:
Q  36 atgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 135  Q
    ||||||||||||||||||||||||| ||||| ||||||||||  |||||||||||| | || ||| ||||||||||||||||||||||||||||||||||    
T  906004 atgatccattagagtatttaccaaatggtttcttggaaagaaacaaagaaaatggattggttgttccatcatgggcaccacaagttgagattcttggtca 906103  T
Q  136 tggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggcc 222  Q
    ||||||||||||||||||||| ||||||||||||||| ||||||||||||||| ||||||||| || |||||  |||||||||||||    
T  906104 tggatcaattggtgggtttttgagtcattgtggttggggttcaactttggagactgtggttaatggggtgcctgtgattgcatggcc 906190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 11 - 222
Target Start/End: Complemental strand, 894664 - 894453
Alignment:
Q  11 tctgcctattttagtggacaaaacaatgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatggg 110  Q
    ||||| ||||||  |||| ||||  ||||||||||||| ||||||||||  |||||| |||||||||| |||||||||||| | || ||| |||||||||    
T  894664 tctgcttattttgttggagaaaaagatgatccattagattatttaccaagtggttttctggaaagaaccaaagaaaatggattggttgttccatcatggg 894565  T
Q  111 caccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgtt 210  Q
    |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||  |    
T  894564 caccacaagttgagattcttggtcatggatcaattggtggttttttgagtcattgtggttggggttcaactttggagagtgtggttaatggtgtgcctat 894465  T
Q  211 gattgcatggcc 222  Q
    ||||||||||||    
T  894464 gattgcatggcc 894453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 230
Target Start/End: Complemental strand, 548887 - 548693
Alignment:
Q  36 atgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 135  Q
    ||||||||||| | |||||||||  |||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  548887 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 548788  T
Q  136 tggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttg 230  Q
    | | |||| |||||| ||||| | |||||||||||||||||||| ||| ||| || | ||| | || |||||  ||||||| |||||||||||||    
T  548787 tagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttg 548693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 36 - 230
Target Start/End: Original strand, 23423717 - 23423911
Alignment:
Q  36 atgatccattagagtatttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtca 135  Q
    ||||||||||| | |||||||||  |||||| |||||||| || |||||  | ||  | || ||| |||||||||| ||||||||||| |||||| ||||    
T  23423717 atgatccattaaattatttaccattaggtttcttggaaaggactaaagatcaaggcttggtggttccatcatgggctccacaagttgaaattcttagtca 23423816  T
Q  136 tggatcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggccattgtttg 230  Q
    | | |||| |||||| ||||| | |||||||||||||||||||| ||| ||| || | ||| | || |||||  ||||||| |||||||||||||    
T  23423817 tagttcaactggtggttttttgactcattgtggttggagttcaagtttagagggtttagtttatggtgtgcctatgattgcttggccattgtttg 23423911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 10201936 - 10201853
Alignment:
Q  140 tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggcca 223  Q
    |||||||| |||||| | |||||||||||||||| ||||||| | ||||||||||| || || ||||| |||||||||||||||    
T  10201936 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggcca 10201853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 140 - 223
Target Start/End: Complemental strand, 10209009 - 10208926
Alignment:
Q  140 tcaattggtgggtttttaagtcattgtggttggagttcaactttggagagtgtggttaacggcgtgccgttgattgcatggcca 223  Q
    |||||||| |||||| | |||||||||||||||| ||||||| | ||||||||||| || || ||||| |||||||||||||||    
T  10209009 tcaattggagggtttgtgagtcattgtggttggaattcaactcttgagagtgtggtgaatggtgtgcctttgattgcatggcca 10208926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 106 - 180
Target Start/End: Complemental strand, 566377 - 566303
Alignment:
Q  106 atgggcaccacaagttgagattcttggtcatggatcaattggtgggtttttaagtcattgtggttggagttcaac 180  Q
    |||||||||||||||||| |||||||||||| | ||||||| ||| |||||| |||||| ||||| || ||||||    
T  566377 atgggcaccacaagttgaaattcttggtcatagttcaattgatggatttttatgtcattttggttcgaattcaac 566303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 190
Target Start/End: Complemental strand, 560495 - 560446
Alignment:
Q  141 caattggtgggtttttaagtcattgtggttggagttcaactttggagagt 190  Q
    |||||||||  ||||||| |||||||||||||| ||||| ||||||||||    
T  560495 caattggtgcatttttaactcattgtggttggaattcaattttggagagt 560446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 190
Target Start/End: Complemental strand, 15326 - 15188
Alignment:
Q  52 tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg 151  Q
    |||||| | ||| |||||||||||||| |||||||| ||  |  |  | |||||||||||||| |||||||| || |||   ||| | ||| |||||||     
T  15326 tttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtgga 15227  T
Q  152 tttttaagtcattgtggttggagttcaactttggagagt 190  Q
    |||||||||||||||||||||| ||||  ||||||||||    
T  15226 tttttaagtcattgtggttggaattcagttttggagagt 15188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 52 - 190
Target Start/End: Original strand, 57518 - 57656
Alignment:
Q  52 tttaccaaaaggttttttggaaagaacaaaagaaaatggactagtagttgcatcatgggcaccacaagttgagattcttggtcatggatcaattggtggg 151  Q
    |||||| | ||| |||||||||||||| |||||||| ||  |  |  | |||||||||||||| |||||||| || |||   ||| | ||| |||||||     
T  57518 tttacctatagggtttttggaaagaaccaaagaaaaaggttttattttggcatcatgggcacctcaagttgaaatacttaaacatagttcagttggtgga 57617  T
Q  152 tttttaagtcattgtggttggagttcaactttggagagt 190  Q
    |||||||||||||||||||||| ||||  ||||||||||    
T  57618 tttttaagtcattgtggttggaattcagttttggagagt 57656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 3067 - 3109
Alignment:
Q  144 ttggtgggtttttaagtcattgtggttggagttcaactttgga 186  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||    
T  3067 ttggtggatttttaagtcattgtggttggaattcgactttgga 3109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Original strand, 16566723 - 16566765
Alignment:
Q  144 ttggtgggtttttaagtcattgtggttggagttcaactttgga 186  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||    
T  16566723 ttggtggatttttaagtcattgtggttggaattcgactttgga 16566765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 186
Target Start/End: Complemental strand, 16598939 - 16598897
Alignment:
Q  144 ttggtgggtttttaagtcattgtggttggagttcaactttgga 186  Q
    ||||||| |||||||||||||||||||||| ||| ||||||||    
T  16598939 ttggtggatttttaagtcattgtggttggaattcgactttgga 16598897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 178
Target Start/End: Original strand, 48398540 - 48398584
Alignment:
Q  134 catggatcaattggtgggtttttaagtcattgtggttggagttca 178  Q
    ||||| |||| |||||||||||||| |||||||||||||| ||||    
T  48398540 catgggtcaactggtgggtttttaactcattgtggttggaattca 48398584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University