View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_41 (Length: 238)
Name: NF11095_high_41
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_41 |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 14544718 - 14544544
Alignment:
| Q |
18 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544718 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
14544619 |
T |
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| Q |
118 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14544618 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
14544544 |
T |
|
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Target: chr4 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 508232 - 508058
Alignment:
| Q |
18 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508232 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
508133 |
T |
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| Q |
118 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
192 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
508132 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
508058 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 8241320 - 8241401
Alignment:
| Q |
18 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagt |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
8241320 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaataggagt |
8241401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 171; Significance: 6e-92; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 171; E-Value: 6e-92
Query Start/End: Original strand, 18 - 192
Target Start/End: Complemental strand, 6932168 - 6931994
Alignment:
| Q |
18 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
117 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932168 |
atgaacatcacagcaaatgtgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
6932069 |
T |
|
| Q |
118 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
192 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6932068 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
6931994 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 182
Target Start/End: Complemental strand, 29732561 - 29732506
Alignment:
| Q |
127 |
aaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatact |
182 |
Q |
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|||||||||||| |||||||||||||| ||||||| | || ||||||||||||||| |
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| T |
29732561 |
aaacaagaaccattcccaacgaaaaagaagaaaaatttggattggtaagtaatact |
29732506 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 168; Significance: 4e-90; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 18 - 189
Target Start/End: Complemental strand, 26290842 - 26290671
Alignment:
| Q |
18 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
117 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26290842 |
atgaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataata |
26290743 |
T |
|
| Q |
118 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactccta |
189 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
26290742 |
aggatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagagttggtaagtaatactactccta |
26290671 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 148; Significance: 3e-78; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 37 - 192
Target Start/End: Original strand, 9292837 - 9292991
Alignment:
| Q |
37 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataataaggatatacaaacaagaac |
136 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9292837 |
tgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataataaggatatacaaacaagaac |
9292936 |
T |
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| Q |
137 |
cagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
192 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9292937 |
cagtcccaacg-aaaagcagaaaaaatagggttggtaagtaatactactcctagac |
9292991 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 169710 - 169538
Alignment:
| Q |
20 |
gaacatcacagcaaatatgattaaaatgttaatagctcccacgtaaataagtagctgtgatgcagctacaaaatgggagtttgataaaatatataataag |
119 |
Q |
| |
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|||||| ||||| |||||||| || | || || |||||||| |||||||| || |||| |||||||||| | ||| ||| |||||| ||| |||||| |
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| T |
169710 |
gaacattacagcgaatatgatcaagacatttatggctcccacataaataagaagttgtgcgacagctacaaagtaggaatttaataaaaaatagaataag |
169611 |
T |
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| Q |
120 |
gatatacaaacaagaaccagtcccaacgaaaaagcagaaaaaatagggttggtaagtaatactactcctagac |
192 |
Q |
| |
|
||||||||||||||||| | ||||| |||||| |||||| |||| |||||||||||||||||||||||||||| |
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| T |
169610 |
gatatacaaacaagaactaatcccagcgaaaaggcagaataaatggggttggtaagtaatactactcctagac |
169538 |
T |
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