View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_42 (Length: 236)
Name: NF11095_high_42
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_42 |
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Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 232
Target Start/End: Complemental strand, 40375084 - 40374844
Alignment:
| Q |
1 |
aaatgccaattttgaaaattaaaactggcattgccaagctattggaacgtagggggtcctcttcaataatttcccttattcaccagtcaattagtaaaaa |
100 |
Q |
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| T |
40375084 |
aaatgccaattttgaaaattaaaactggcattgccaaactattggaacgtagggggtcctcttcaataatttcccttattcgccagtcaattagtacaaa |
40374985 |
T |
|
| Q |
101 |
taaccttcatctcttaaagtgtgatggagcatgaaacaatgacattaagggcaagga---------attcaataacagcctctctatatcctctttccaa |
191 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
40374984 |
taaccttcatctcttaaagtgtgatggaacatgaaacaatgacattaagggcaaggaacaaatcttattcaataacagcctctctatatcctctttccaa |
40374885 |
T |
|
| Q |
192 |
gcaagaacgataacatgtaaaatagtcataggttctgcatg |
232 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
40374884 |
gcaagaacgataacatgtaaaatagtcataggttctgcatg |
40374844 |
T |
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