View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11095_high_44 (Length: 219)

Name: NF11095_high_44
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11095_high_44
NF11095_high_44
[»] chr6 (2 HSPs)
chr6 (1-219)||(8294626-8294844)
chr6 (1-219)||(33256911-33257129)
[»] scaffold0428 (1 HSPs)
scaffold0428 (1-219)||(1029-1247)
[»] chr8 (5 HSPs)
chr8 (1-162)||(894674-894835)
chr8 (1-162)||(905808-905969)
chr8 (3-108)||(1963282-1963387)
chr8 (12-163)||(3707639-3707790)
chr8 (12-163)||(3770405-3770556)
[»] scaffold0184 (2 HSPs)
scaffold0184 (4-147)||(15380-15523)
scaffold0184 (35-124)||(11863-11952)
[»] scaffold0078 (4 HSPs)
scaffold0078 (4-147)||(57321-57464)
scaffold0078 (4-147)||(22032-22175)
scaffold0078 (4-147)||(2778-2921)
scaffold0078 (35-124)||(60892-60981)
[»] chr3 (1 HSPs)
chr3 (141-219)||(46720409-46720486)
[»] chr7 (3 HSPs)
chr7 (37-123)||(16490658-16490744)
chr7 (79-147)||(16566434-16566502)
chr7 (79-147)||(16599160-16599228)
[»] chr1 (1 HSPs)
chr1 (3-108)||(5902455-5902560)


Alignment Details
Target: chr6 (Bit Score: 207; Significance: 1e-113; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 219
Target Start/End: Original strand, 8294626 - 8294844
Alignment:
Q  1 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8294626 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 8294725  T
Q  101 ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttgactcattcctaatcatag 200  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  8294726 ccaaaagagacaaaaagaacagaacttggttgttgattttccaaccaccttaaacacattgacatgtttgcttcattatttgactcattcctaatcatag 8294825  T
Q  201 gtccaaccggataaacact 219  Q
    |||||||||||||||||||    
T  8294826 gtccaaccggataaacact 8294844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 33257129 - 33256911
Alignment:
Q  1 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33257129 tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt 33257030  T
Q  101 ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttgactcattcctaatcatag 200  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||| ||||    
T  33257029 ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgcttcattatttgactcatttctaatgatag 33256930  T
Q  201 gtccaaccggataaacact 219  Q
    ||||||||||| |||||||    
T  33256929 gtccaaccggaaaaacact 33256911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 175; Significance: 2e-94; HSPs: 1)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 1247 - 1029
Alignment:
Q  1 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 100  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  1247 tttacttggagctctcacaacccacaagaacttgtgaccactcaattctagaccaaaagctaactcattgagttgatcttgagagagtgttccaccactt 1148  T
Q  101 ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgacatgcttgcttcattatttgactcattcctaatcatag 200  Q
    ||||| |||||||||| ||||||||||||||| ||||||||||||||||||||||| | ||||||| |||||||||||||||||||||| ||||| ||||    
T  1147 ccaaaggagacaaaaataacagaacttggtggctgattttccaaccaccttaaacacactgacatgtttgcttcattatttgactcatttctaatgatag 1048  T
Q  201 gtccaaccggataaacact 219  Q
    ||||||||||| |||||||    
T  1047 gtccaaccggaaaaacact 1029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 94; Significance: 5e-46; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 162
Target Start/End: Original strand, 894674 - 894835
Alignment:
Q  1 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 100  Q
    |||||||||| |||| ||||||||||||||||| | ||||||||||||||| ||||| |||||||| |||||||| || ||||| | ||||||||||||     
T  894674 tttacttggaactctaacaacccacaagaatttcttaccactcaattctagtccaaatgctaactcattgagttgttcatgagaaactgttccaccactc 894773  T
Q  101 ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattga 162  Q
    |||||| | ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||    
T  894774 ccaaaacatacataaagaacagaacttggtggttgattctccaaccaccttaaacacattga 894835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 905969 - 905808
Alignment:
Q  1 tttacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccactt 100  Q
    |||||||||| |||| |||||||||||||| || | ||||||||||||||  ||||| |||||||| || ||||| || ||||| | ||||||||||||     
T  905969 tttacttggaactctaacaacccacaagaactttttaccactcaattctaatccaaatgctaactcattcagttgttcatgagaaactgttccaccactc 905870  T
Q  101 ccaaaagagacaaaaagaacagaacttggtggttgattttccaaccaccttaaacatattga 162  Q
    |||||| | ||| ||||||||||| |||| |||||||| ||||||||||||||||| |||||    
T  905869 ccaaaacatacataaagaacagaatttggaggttgattctccaaccaccttaaacacattga 905808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 1963387 - 1963282
Alignment:
Q  3 tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc 102  Q
    ||||||||||||| |||||||| |||||||| |||  ||||||||| | ||| ||||| ||||| |  | ||| ||||| || ||||| |||||||| ||    
T  1963387 tacttggagctcttacaacccataagaatttatgattactcaattccaaacccaaagccaactcatcaatttgttcttgcgaaagtgtgccaccactacc 1963288  T
Q  103 aaaaga 108  Q
    ||||||    
T  1963287 aaaaga 1963282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 163
Target Start/End: Complemental strand, 3707790 - 3707639
Alignment:
Q  12 ctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagac 111  Q
    |||||| ||||||||||||||| |||||||||||||| || || |||||||  || |||  ||| | |||||| |  ||||| |||||||||||  | ||    
T  3707790 ctctcaaaacccacaagaatttctgaccactcaattccagccccaaagctagttcattggtttgttgttgagataaagttcctccacttccaaagcacac 3707691  T
Q  112 aaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgac 163  Q
    | | | ||| ||  |||||| |||||| ||||||||| | ||||| ||||||    
T  3707690 atacaaaactgagtttggtgtttgattctccaaccacttcaaacagattgac 3707639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 12 - 163
Target Start/End: Original strand, 3770405 - 3770556
Alignment:
Q  12 ctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagac 111  Q
    |||||| ||||||||||||||| ||||||||||| || || || |||||||  || |||  ||| | |||||| |  ||||| |||||||||||  ||||    
T  3770405 ctctcaaaacccacaagaatttctgaccactcaactccagccccaaagctagttcattggtttgttgttgagaaaaagttcctccacttccaaagcagac 3770504  T
Q  112 aaaaagaacagaacttggtggttgattttccaaccaccttaaacatattgac 163  Q
    | | | ||| ||  |||||| |||||| ||||||||| | ||||| ||||||    
T  3770505 atacaaaactgagtttggtgtttgattctccaaccacttcaaacagattgac 3770556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 147
Target Start/End: Original strand, 15380 - 15523
Alignment:
Q  4 acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca 103  Q
    |||||| |||||||||||||| | |||| | |||||||||||||| | |||||||||||  || || | |||   |||||| ||||||||||||||||||    
T  15380 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca 15479  T
Q  104 aaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    ||||| ||| | | ||||||| || ||||||| |||| ||||||    
T  15480 aaagaaacatacaaaacagaattttgtggttggtttttcaacca 15523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Original strand, 11863 - 11952
Alignment:
Q  35 tgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaa 124  Q
    |||||||| ||||| |  |||||||||||||| || | ||| |||||||| |||||||||||||||||||| || ||||| | |||||||    
T  11863 tgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaa 11952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 48; Significance: 1e-18; HSPs: 4)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 57464 - 57321
Alignment:
Q  4 acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca 103  Q
    |||||| |||||||||||||| | |||| | |||||||||||||| | |||||||||||  || || | |||   |||||| ||||||||||||||||||    
T  57464 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcatttatttgtgtttgagaaagtgttccaccacttcca 57365  T
Q  104 aaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    ||||| ||| | | ||||||| || ||||||| |||| ||||||    
T  57364 aaagaaacatacaaaacagaattttgtggttggtttttcaacca 57321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 22175 - 22032
Alignment:
Q  4 acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca 103  Q
    |||||| |||||||  ||||| | |||| | |||||||||||||| | ||||||||||| ||| |||| |||   |||||| ||||||||||||||||||    
T  22175 acttggtgctctcaatacccaaatgaatctttgaccactcaattccaaaccaaaagctagctcattgatttgtgtttgagaaagtgttccaccacttcca 22076  T
Q  104 aaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    ||||| ||| | | ||| ||| || ||||||| |||| ||||||    
T  22075 aaagaaacatacaaaactgaattttgtggttggtttttcaacca 22032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 4 - 147
Target Start/End: Complemental strand, 2921 - 2778
Alignment:
Q  4 acttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcca 103  Q
    |||||| |||||||||||||| | |||| | |||||||||||||| | |||||||||||  || || |  ||   ||| || ||||||||||||||||||    
T  2921 acttggtgctctcacaacccaaatgaatctttgaccactcaattccaaaccaaaagctagttcattcatctgtctttgtgaaagtgttccaccacttcca 2822  T
Q  104 aaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    ||||| ||| | | ||||||| || ||||||| |||| ||||||    
T  2821 aaagaaacatacaaaacagaattttgtggttggtttttcaacca 2778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 35 - 124
Target Start/End: Complemental strand, 60981 - 60892
Alignment:
Q  35 tgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacagaa 124  Q
    |||||||| ||||| |  |||||||||||||| || | ||| |||||||| |||||||||||||||||||| || ||||| | |||||||    
T  60981 tgaccacttaattccaacccaaaagctaactcattaacttgttcttgagaaagtgttccaccacttccaaatgaaacaaacaaaacagaa 60892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 219
Target Start/End: Original strand, 46720409 - 46720486
Alignment:
Q  141 ccaaccaccttaaacatattgacatgcttgcttcattatttgactcattcctaatcataggtccaaccggataaacact 219  Q
    ||||| ||||| |||| | ||||||||||||||||||||||||||||||||||||   |||||||| ||||||||||||    
T  46720409 ccaacaaccttgaacacactgacatgcttgcttcattatttgactcattcctaatggcaggtccaa-cggataaacact 46720486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 37 - 123
Target Start/End: Complemental strand, 16490744 - 16490658
Alignment:
Q  37 accactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttccaaaagagacaaaaagaacaga 123  Q
    ||||||||||||||  ||| |||||||||| || | ||| ||||| || ||||||||||||||||||||||| ||||| | ||||||    
T  16490744 accactcaattctaacccataagctaactcattcacttgctcttgtgaaagtgttccaccacttccaaaagacacaaacaaaacaga 16490658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Complemental strand, 16566502 - 16566434
Alignment:
Q  79 ttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    |||||| ||||||||| ||||||||||||| ||| | | ||||||| || ||||||| |||| ||||||    
T  16566502 ttgagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaacca 16566434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 79 - 147
Target Start/End: Original strand, 16599160 - 16599228
Alignment:
Q  79 ttgagagagtgttccaccacttccaaaagagacaaaaagaacagaacttggtggttgattttccaacca 147  Q
    |||||| ||||||||| ||||||||||||| ||| | | ||||||| || ||||||| |||| ||||||    
T  16599160 ttgagaaagtgttccaacacttccaaaagaaacatacaaaacagaattttgtggttggtttttcaacca 16599228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 3 - 108
Target Start/End: Complemental strand, 5902560 - 5902455
Alignment:
Q  3 tacttggagctctcacaacccacaagaatttgtgaccactcaattctagaccaaaagctaactcgttgagttgatcttgagagagtgttccaccacttcc 102  Q
    ||||||| ||||| |||||||| |||||||| |||  ||||||||| | ||||| ||| ||||| |  | ||| ||||| || ||||  |||||||||||    
T  5902560 tacttggtgctcttacaacccataagaatttatgattactcaattccaaaccaatagccaactcatcaatttgttcttgtgaaagtgcaccaccacttcc 5902461  T
Q  103 aaaaga 108  Q
    ||||||    
T  5902460 aaaaga 5902455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University