View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_high_45 (Length: 210)
Name: NF11095_high_45
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_45 |
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Alignment Details
Target: chr1 (Bit Score: 68; Significance: 1e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 118 - 193
Target Start/End: Original strand, 594879 - 594954
Alignment:
| Q |
118 |
ccattgtatcagtttatttaataaagttttcttttcaatgatcatctagaaaatacaaataaaaatcgcctccaca |
193 |
Q |
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| T |
594879 |
ccattgtatcagtttatttaataaagttttcttttcaacgatcatatagaaaatacaaataaaaatcgcctccaca |
594954 |
T |
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Target: chr1; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 594780 - 594845
Alignment:
| Q |
19 |
agctagtcgttgaaacataccttcttcaaatcttcaatgctttatttgttcaagtttatcaatttt |
84 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
594780 |
agctagtcgttgaaacgtaccttcttcaaatcttcaatgctttatttgttcaagtttatcaatttt |
594845 |
T |
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