View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_high_9 (Length: 535)
Name: NF11095_high_9
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_high_9 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 474; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 29594462 - 29594975
Alignment:
| Q |
16 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
115 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29594462 |
attcttcttgccattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
29594561 |
T |
|
| Q |
116 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29594562 |
caaaactaaaataacaaagatattaacgttaatataccaccagtttgatcttgaacaccttgtaagattttttataagctttttcaatcacactaatttt |
29594661 |
T |
|
| Q |
216 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatat |
315 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29594662 |
atcaaaggattggttttgcattacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatat |
29594761 |
T |
|
| Q |
316 |
aagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttattta |
415 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29594762 |
aagcttcccacattctaattaaagaggtttgggaaaaatacattcatctcccttgaggtctctttaaatgacacagacaccccctctattttcttattta |
29594861 |
T |
|
| Q |
416 |
acattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaa |
515 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
29594862 |
acattgacctcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaa |
29594961 |
T |
|
| Q |
516 |
tttaacttctctgc |
529 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
29594962 |
tttaacttctctgc |
29594975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 346 - 459
Target Start/End: Original strand, 11353611 - 11353724
Alignment:
| Q |
346 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgt |
445 |
Q |
| |
|
||||||||||| |||| || |||| ||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||||||| | ||| ||| | |
|
|
| T |
11353611 |
gggaaaaatacgttcacctcccttaaggtctcgttaaatgacacagacaccccctctattttcttatttaacaatgacctcccctactgtttaacacctt |
11353710 |
T |
|
| Q |
446 |
ttaacttccgtcaa |
459 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
11353711 |
ttaacttccgtcaa |
11353724 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 458; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Original strand, 52077355 - 52077868
Alignment:
| Q |
16 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
115 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
52077355 |
attcttcttgccattctccactaatttggcgtgaaggttatctgatatgggtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
52077454 |
T |
|
| Q |
116 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
52077455 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaatttt |
52077554 |
T |
|
| Q |
216 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatat |
315 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52077555 |
atcaaatgactggttttgcattacacaaatttaagagagcagatattgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatat |
52077654 |
T |
|
| Q |
316 |
aagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttattta |
415 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
52077655 |
aagcttcccacattctaattaaagaggtttgggaaaaatacattcatctcccttgaggtctctttaaaagacacagacaccccctctattttcttattta |
52077754 |
T |
|
| Q |
416 |
acattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaa |
515 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
52077755 |
acattgacctcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaa |
52077854 |
T |
|
| Q |
516 |
tttaacttctctgc |
529 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
52077855 |
tttaacttctctgc |
52077868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 390; E-Value: 0
Query Start/End: Original strand, 16 - 529
Target Start/End: Complemental strand, 29058916 - 29058401
Alignment:
| Q |
16 |
attcttcttgtcattctccagtaatttggcgtgaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaatcccaatgaacacaaa |
115 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
29058916 |
attcttcttgccattctccagtaatttgaagtgaaggttatctgatatgggtataagttttgcaagagcttctaatgataaaaatcccaatgaacacaaa |
29058817 |
T |
|
| Q |
116 |
caaaactaaaataacaaagatattaacattaatataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaatttt |
215 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
29058816 |
caaaactaaaataacaaagatattaacatcaatataccactagtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaatttt |
29058717 |
T |
|
| Q |
216 |
atcaaaggattggttttgcattacacaaatttaagagagcatatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatat |
315 |
Q |
| |
|
||||||||| ||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |
|
|
| T |
29058716 |
atcaaaggactggctttgcattacacaaatttaagagagcagatcttgcaactcagtcttctattttatttacaaggtttcatcatatctgaaaatattt |
29058617 |
T |
|
| Q |
316 |
aagcttcccacattctcattaaagaggtttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttattta |
415 |
Q |
| |
|
|||||||||||||||| |||| ||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
29058616 |
aagcttcccacattctaattacagaggtttgagaaaaatacattaatctctcttgaggtctctttaaatgacacagacacccccactattttcttattta |
29058517 |
T |
|
| Q |
416 |
acattgacatcccctattatttgacattgtttaacttccgtcaagttatttttatcaaacaagaaaaa--gaaaaact-attgttgcctctcgctgatgt |
512 |
Q |
| |
|
|||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||||||| |||||||||||||| |||||| |
|
|
| T |
29058516 |
acattgacctcccctattatttgacactgtttaacttccgtcaagttatttttatcaaacaaaaaaaaagaaaaaactaattgttgcctctcgttgatgt |
29058417 |
T |
|
| Q |
513 |
gaatttaacttctctgc |
529 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
29058416 |
-aatttaacttctctgc |
29058401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 157 - 529
Target Start/End: Original strand, 52088298 - 52088670
Alignment:
| Q |
157 |
agtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatttaagagagca |
256 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||| ||| |
|
|
| T |
52088298 |
agtttgatcttgaacaccttgtaagatttttcataagctttttcaatcacactaattttatcaaatgactggttttgcattacacaaatttaagagggca |
52088397 |
T |
|
| Q |
257 |
tatcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctcattaaagaggtttgggaaaaatac |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
52088398 |
ggtcttgcaactcagtcttctattttatttacaaggtttcatcaaatctgaaaatatataagcttcccacattctaattaaagaggtttgggaaaaatac |
52088497 |
T |
|
| Q |
357 |
attcatcttccttgaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgt |
456 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
52088498 |
attcatctcccttgaggtctctttaaacgacacagacaccccctctattttcttatttaacattgacctcccctattatttgacattgtttaacttccgt |
52088597 |
T |
|
| Q |
457 |
caagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgctgatgtgaatttaacttctctgc |
529 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
52088598 |
caagttatttttatcaaacaagaaaaagaaaaactattgttgcctctcgttgatgtgaatttaacttctctgc |
52088670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 344 - 407
Target Start/End: Complemental strand, 43899059 - 43898996
Alignment:
| Q |
344 |
ttgggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
407 |
Q |
| |
|
||||||||| || |||||||| |||||||||||||| ||||| || |||||||||||||||| |
|
|
| T |
43899059 |
ttgggaaaactatattcatctcccttgaggtctcttgaaatgtaactcacaccccctctatttt |
43898996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 109; Significance: 1e-54; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 48 - 287
Target Start/End: Complemental strand, 51288793 - 51288555
Alignment:
| Q |
48 |
gaaggttatctgatatgtgtataagttttgcaagagcttctgatgataaaaa-tcccaatgaacacaaacaaaactaaaataacaaagatattaacatta |
146 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||||||| || |||||||||| ||||| ||||||||||||||||||||||| |||||||| |||||| | |
|
|
| T |
51288793 |
gaaggttatctgatatgggtataaattttgcaagagctcctaatgataaaaaatcccactgaacacaaacaaaactaaaatagcaaagatactaacatca |
51288694 |
T |
|
| Q |
147 |
atataccaccagtttgatcttgaacaccttgtaagatttttgataagctttttcaatcacactaattttatcaaaggattggttttgcattacacaaatt |
246 |
Q |
| |
|
|||| | ||| || ||||||| |||||||||||| |||||| ||||||||||||||||||||||| ||||| || ||| |||||||| || | ||||||| |
|
|
| T |
51288693 |
atat-ctaccggtgtgatctttaacaccttgtaaaatttttcataagctttttcaatcacactaa-tttataaagggactggttttggatcatacaaatt |
51288596 |
T |
|
| Q |
247 |
taagagagcatatcttgcaactcagtcttctattttattta |
287 |
Q |
| |
|
||||||||| | ||| |||||| | |||||||||||||| |
|
|
| T |
51288595 |
taagagagcggaatttgaaactcaattttctattttattta |
51288555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 370 - 470
Target Start/End: Original strand, 4564336 - 4564436
Alignment:
| Q |
370 |
gaggtctctttaaatgacacagacaccccctctattttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttattttta |
469 |
Q |
| |
|
||||||||||||||| | ||| ||||||| |||||||| |||| ||||| |||| |||| |||| |||||||| |||||||||||||||| ||||||||| |
|
|
| T |
4564336 |
gaggtctctttaaataatacaaacaccccttctatttttttatctaacaatgacctcccatattgtttgacatcgtttaacttccgtcaaattattttta |
4564435 |
T |
|
| Q |
470 |
t |
470 |
Q |
| |
|
| |
|
|
| T |
4564436 |
t |
4564436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 369 - 474
Target Start/End: Original strand, 4558105 - 4558211
Alignment:
| Q |
369 |
tgaggtctctttaaatgacacagacaccccctcta-ttttcttatttaacattgacatcccctattatttgacattgtttaacttccgtcaagttatttt |
467 |
Q |
| |
|
|||||||||||||||| ||||| ||||||| | || |||| |||||||||| |||| |||||| || ||| |||| |||||||| |||| ||||||| |
|
|
| T |
4558105 |
tgaggtctctttaaataacacaaacaccccttttattttttttatttaacaatgacctcccctgttgtttaacatcctttaactttgatcaaattatttt |
4558204 |
T |
|
| Q |
468 |
tatcaaa |
474 |
Q |
| |
|
||||||| |
|
|
| T |
4558205 |
tatcaaa |
4558211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 12142133 - 12142073
Alignment:
| Q |
346 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
407 |
Q |
| |
|
|||||||||||| |||||| |||||||||||||||||||||| | |||| |||||||||||| |
|
|
| T |
12142133 |
gggaaaaatacactcatctcccttgaggtctctttaaatgacgccgaca-cccctctatttt |
12142073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 346 - 407
Target Start/End: Complemental strand, 44539625 - 44539564
Alignment:
| Q |
346 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctctatttt |
407 |
Q |
| |
|
|||||||||||||||| || || |||| | ||||||||||||| |||||||||||||||||| |
|
|
| T |
44539625 |
gggaaaaatacattcacctcccctgagttttctttaaatgacagagacaccccctctatttt |
44539564 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 346 - 403
Target Start/End: Original strand, 24153192 - 24153249
Alignment:
| Q |
346 |
gggaaaaatacattcatcttccttgaggtctctttaaatgacacagacaccccctcta |
403 |
Q |
| |
|
||||||| |||| ||| |||||||||||||| || |||||| |||||||||| ||||| |
|
|
| T |
24153192 |
gggaaaattacactcaccttccttgaggtctattaaaatgagacagacacccactcta |
24153249 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University