View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_10 (Length: 532)
Name: NF11095_low_10
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 461; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 461; E-Value: 0
Query Start/End: Original strand, 1 - 514
Target Start/End: Complemental strand, 241513 - 241000
Alignment:
| Q |
1 |
aaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgttataatgtgt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
241513 |
aaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgttataatgtgt |
241414 |
T |
|
| Q |
101 |
gttgttgctgtccacacatttcctgcaatattgcacaccaaatattaatcataaacatcatttttcaatcgtaattattccttnnnnnnncaaatcatta |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
241413 |
gttgttgctgtccacacatttcctgcaatattgcacaccaaatattaatcataaacatcatttttcaatcgtaattattccttaaaaaaacaaatcatta |
241314 |
T |
|
| Q |
201 |
gacgcatgtgtaaaataattgatgcatagttgcttttacaattttcgggtatttgtatggaattctagcttcaattttggttttttccatgaaaaagaag |
300 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||| |
|
|
| T |
241313 |
gacgcatgtgttaaataattgatgcatagttgcttttataattttcgggtatttgtatggaattctggcttcgattttggtttttttcatgaaaaagaag |
241214 |
T |
|
| Q |
301 |
ctcaactattcatatacattagttataattttggttaatttctgttgaaaaatttgttgtactaattaaattttcttgatacgcaagagtcagagatcaa |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
241213 |
ctcaactattcatatacattagttataattttggttagtttctgttggaaaatttgttgtactaattaaattttcttggtacgcaagagtcagagatcaa |
241114 |
T |
|
| Q |
401 |
acctacaaatagcttaagtgtccaaatctttaaccattattaagataaaaagcataagtaaaagaatcagattctgattcagggaattaagatagaaaga |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
241113 |
acctacaaatagcttaagtgtccaaatctttaaccattattaagataaaaagcataagtaaaagaatcagattctgattcagggaattaagatagaaaga |
241014 |
T |
|
| Q |
501 |
aagaaggtacatac |
514 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
241013 |
aagaaggtacatac |
241000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 326
Target Start/End: Original strand, 223648 - 223983
Alignment:
| Q |
1 |
aaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgttataatgtgt |
100 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
223648 |
aaaggttagtatactggctataccagctatccatcctagttgagccatagcccatgctagagccaacacccctgccccaactaccactgttatgatgtgt |
223747 |
T |
|
| Q |
101 |
gttgttgctgtccacacatttcctgcaatattgcacaccaaatattaatcataaacatcatttttcaatcgtaattattcctt----------nnnnnnn |
190 |
Q |
| |
|
|||||||| |||||||| || ||||||||||||| ||||||||||||||||||||||| ||||||| || || ||||| | |
|
|
| T |
223748 |
gttgttgccgtccacacgttccctgcaatattgcgcaccaaatattaatcataaacatgttttttcattcatacttattaaatgaatttatacagtaaca |
223847 |
T |
|
| Q |
191 |
caaatcattagacgcatgtgtaaaataattgatgcatagttgcttttacaattttcgggtatttgtatggaattctagcttcaattttggt-tttttcca |
289 |
Q |
| |
|
|| ||||||||||| |||||| ||||| |||||||||||||||||||| || |||||||||||||||||||||||| |||| ||||||||| |||||||| |
|
|
| T |
223848 |
cacatcattagacggatgtgttaaatagttgatgcatagttgcttttaaaactttcgggtatttgtatggaattctggctt-aattttggtctttttcca |
223946 |
T |
|
| Q |
290 |
tgaaaaagaagctcaactattcatatacattagttat |
326 |
Q |
| |
|
||||||| ||| | ||||||| |||||| ||||||| |
|
|
| T |
223947 |
tgaaaaaaaagttttactattcgtatacagtagttat |
223983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 460 - 514
Target Start/End: Original strand, 224478 - 224532
Alignment:
| Q |
460 |
aaaagaatcagattctgattcagggaattaagatagaaagaaagaaggtacatac |
514 |
Q |
| |
|
||||||||||||||||||||||| ||||||| |||||||| |||||||||||||| |
|
|
| T |
224478 |
aaaagaatcagattctgattcagagaattaaaatagaaaggaagaaggtacatac |
224532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 293 - 326
Target Start/End: Original strand, 224147 - 224180
Alignment:
| Q |
293 |
aaaagaagctcaactattcatatacattagttat |
326 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
|
|
| T |
224147 |
aaaagaagctcaactattcatatacagtagttat |
224180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 372 - 441
Target Start/End: Original strand, 224195 - 224264
Alignment:
| Q |
372 |
tttcttgatacgcaagagtcagagatcaaacctacaaatagcttaagtgtccaaatctttaaccattatt |
441 |
Q |
| |
|
|||||| |||| || ||||| || |||||||||||||| || || |||||||||||| ||||||||||| |
|
|
| T |
224195 |
tttcttcatacacaggagtcggaattcaaacctacaaattgcctacgtgtccaaatctctaaccattatt |
224264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 61; Significance: 6e-26; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 1 - 125
Target Start/End: Original strand, 12031464 - 12031588
Alignment:
| Q |
1 |
aaagattattatactggctataccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgttataatgtgt |
100 |
Q |
| |
|
|||||| | |||||| || ||||||||||||||||||| ||| || ||||| ||||||| |||||||| ||||| |||| |||||| ||||| |||||| |
|
|
| T |
12031464 |
aaagatcaatatacttgcaataccagctatccatcctaattgtgcaatggcatatgctagggccaacactcctgcaccaattaccaccgttattatgtgt |
12031563 |
T |
|
| Q |
101 |
gttgttgctgtccacacatttcctg |
125 |
Q |
| |
|
||||| ||||||||||||||||||| |
|
|
| T |
12031564 |
gttgtagctgtccacacatttcctg |
12031588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 58; Significance: 4e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 23 - 128
Target Start/End: Complemental strand, 51528520 - 51528415
Alignment:
| Q |
23 |
ccagctatccatcctagttgagccatggcccatgctagagccaacacccctgccccaactaccactgttataatgtgtgttgttgctgtccacacatttc |
122 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||| ||||| || || ||||||||||| |||||||||||||| ||| |||| || | |
|
|
| T |
51528520 |
ccagctatccatcctagttgagaaattgcccatgctagagccaacactcctgcacccaccaccactgttattatgtgtgttgttgccgtcaacacgttcc |
51528421 |
T |
|
| Q |
123 |
ctgcaa |
128 |
Q |
| |
|
|||||| |
|
|
| T |
51528420 |
ctgcaa |
51528415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University