View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_16 (Length: 454)
Name: NF11095_low_16
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 368; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 21 - 436
Target Start/End: Original strand, 19549541 - 19549956
Alignment:
| Q |
21 |
tcaaaacccaactgaattgccagaaaagttaacaaagccccacctccaaccccaaggcataaagctttcggtctaaacccatttcgaattcttccatcta |
120 |
Q |
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| T |
19549541 |
tcaaaacccaactgaattgccagaaaagttaacaaagccccacctccaaccccaaggcataaagctttcggtctaaacccatttcgaattcttccatcta |
19549640 |
T |
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| Q |
121 |
tataatcacttatcaatgaaagactagccaccataggtggcaaataaggatgaaccagaacccgaagatcgggtataaactttgtatcaccaatacatac |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||| || ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| |
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| T |
19549641 |
tataatcacttatcaatgaaagactagccaccataggtcctaagtaaggatgaaccaaaacctgaagatcgggtataaactttgtatcaccaatacatac |
19549740 |
T |
|
| Q |
221 |
attattcgaaccagaatcggtctctggaacaataagaacctcggtttgaatcaaattaggcatcctcttaaacctcaaccgccttcgaaattctcttgaa |
320 |
Q |
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||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19549741 |
attattcaaaccagaatcggtctctggaacaataagaacctctgtttgaatcaaattaggcatcctcttaaacctcaaccgccttcgaaattctcttgaa |
19549840 |
T |
|
| Q |
321 |
tcattctgagtttcaatttcgacatcttcaactaacatttgaccaacatgagaactaagacattgatgtataactaaactagaaattaaactatcttcat |
420 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||||| |
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| T |
19549841 |
tcattctgagtttcgatttcgacatcttcaactaacatttgaccaacatgagaactaagacattgatttataactagactagaaattaaattatcttcat |
19549940 |
T |
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| Q |
421 |
aactcaaaatgggtat |
436 |
Q |
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|||||||||||||||| |
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| T |
19549941 |
aactcaaaatgggtat |
19549956 |
T |
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