View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_18 (Length: 444)
Name: NF11095_low_18
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 146; Significance: 9e-77; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 149 - 331
Target Start/End: Complemental strand, 27055818 - 27055636
Alignment:
| Q |
149 |
ttatacattaaagagaaatactattgtannnnnnnagtttatactttcactttgaatataaagaaaatgaagaagttcttcagaaattaatacaaggttg |
248 |
Q |
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| T |
27055818 |
ttatacattaaagagaaatactattgtatttttttagtttatactttcaccttgaatataaagaaaatgaagaagttcttcagaaattaatacaaggtgg |
27055719 |
T |
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| Q |
249 |
aaataaaagccagatgtctgctattgaaggcaatgtagttacgtgcaaataaggttagaaaacaaaagagacgacattctcaa |
331 |
Q |
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| T |
27055718 |
aaataaaagccagatgtctgctattgaaggcaatgtacttacgtgcaaataaggttggaaaacaaaagagacgacattctcaa |
27055636 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 371 - 433
Target Start/End: Complemental strand, 27055637 - 27055575
Alignment:
| Q |
371 |
aattgtgtggacaagagacgtttggagaaagnnnnnnngtcgtatataacccatcgttttcat |
433 |
Q |
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| T |
27055637 |
aattgtgtggacaagagacgtttggagaaagaaaaaaagtcgtatataacccatcgttttcat |
27055575 |
T |
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