View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_23 (Length: 341)
Name: NF11095_low_23
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_23 |
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Alignment Details
Target: chr5 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36466297 - 36466629
Alignment:
| Q |
1 |
tcatggaaaagtgatgtttgtctttagaaagtgtactaaattgtcgttaagtagtaaaatttataagttagtatcgatgtagattgtgaaatctcaattt |
100 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466297 |
tcatggaaaagtgatgtttgtcattagaaagtgtactaaattgtcgttaagtagtaaaatttataagttagtatcgatgtagattgtgaaatctcaattt |
36466396 |
T |
|
| Q |
101 |
aactactacgataatagtttggatatatacaattggggggtgtttcacttggcaatggttggattaactgttctttaaagaaataggtaagacactgatt |
200 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36466397 |
aactactacaataatagtttggatatatacaattggggggtgtttcacttggcaatggttggattaactgttctttaaagaaataggtaagacactgatt |
36466496 |
T |
|
| Q |
201 |
aggtcatgatagatctgcttctcttaattacatagaaactcacccccttggttgcaattgttcgaatagtttagtttcacgacatttgatcaaaatagtt |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
36466497 |
aggtcatgatagatctgcttctcttaattacatagaaactcacccccttgattgcaattgttccaatagtttagtttcacgacatttgatcaaaatagtt |
36466596 |
T |
|
| Q |
301 |
aagttaatttctagatcactaacctttttctct |
333 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| |
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| T |
36466597 |
aagttaatttctagatcactaatctttttctct |
36466629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 36443160 - 36443492
Alignment:
| Q |
1 |
tcatggaaaagtgatgtttgtctttagaaagtgtactaaattgtcgttaagtagtaaaatttataagttagtatcgatgtagattgtgaaatctcaattt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36443160 |
tcatggaaaagtgatgtttgtctttagaaagtgtactaaattgtcgttaagtagtaaaatttataagttagtatcgatgtagattgtgaaatctcaattt |
36443259 |
T |
|
| Q |
101 |
aactactacgataatagtttggatatatacaattggggggtgtttcacttggcaatggttggattaactgttctttaaagaaataggtaagacactgatt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
36443260 |
aactactacgataatagtttggatatatacaattggggggtgtttcacttggcaatggttggattaactgttctttaaagaaaaaggtaagacactgatt |
36443359 |
T |
|
| Q |
201 |
aggtcatgatagatctgcttctcttaattacatagaaactcacccccttggttgcaattgttcgaatagtttagtttcacgacatttgatcaaaatagtt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36443360 |
aggtcatgatagatctgcttctcttaattacatagaaacttgccgccttggttgcaattgttcgaatagtttagtttcacgacatttgatcaaaatagtt |
36443459 |
T |
|
| Q |
301 |
aagttaatttctagatcactaacctttttctct |
333 |
Q |
| |
|
|||||||||| ||| |||||||||||||||||| |
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|
| T |
36443460 |
aagttaatttttagttcactaacctttttctct |
36443492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 49 - 165
Target Start/End: Original strand, 3144809 - 3144923
Alignment:
| Q |
49 |
aagtagtaaaatttataagttagtatcgatgtagattgtgaaatctcaatttaactactacgataata-gtttggatatat-acaattggggggtgtttc |
146 |
Q |
| |
|
|||||||||||| |||||||| ||||| | | |||||||||||||||| |||| ||||||||||||| ||| |||||||| ||||||||| ||| | |
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| T |
3144809 |
aagtagtaaaatatataagtttgtatctacatggattgtgaaatctcaacttaagtactacgataataggttgggatatataacaattggg----gttcc |
3144904 |
T |
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| Q |
147 |
acttggcaatggttggatt |
165 |
Q |
| |
|
|||||||||||||| |||| |
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|
| T |
3144905 |
acttggcaatggtttgatt |
3144923 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 66
Target Start/End: Complemental strand, 1867257 - 1867214
Alignment:
| Q |
23 |
tttagaaagtgtactaaattgtcgttaagtagtaaaatttataa |
66 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| |||||||| |
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| T |
1867257 |
tttagcaagtgtactgaattgtcgttaagtagtaatatttataa |
1867214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 35410772 - 35410809
Alignment:
| Q |
29 |
aagtgtactaaattgtcgttaagtagtaaaatttataa |
66 |
Q |
| |
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|||||||||||||||| || |||||||||||||||||| |
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|
| T |
35410772 |
aagtgtactaaattgttgtcaagtagtaaaatttataa |
35410809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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