View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_24 (Length: 335)
Name: NF11095_low_24
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_24 |
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Alignment Details
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 34 - 334
Target Start/End: Complemental strand, 36940385 - 36940087
Alignment:
| Q |
34 |
gcaattttctaatgattttaccaactcaatttgaatgatgctggaagtaatcttt-catgatgattgctcttttgaccgcctatttgctctttatcctaa |
132 |
Q |
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| T |
36940385 |
gcaattttctaataattttaccaactcaatttgaatgaggccggaaataatcttttcatgatgattgctcttttggccgcctatttgctctttatcctga |
36940286 |
T |
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| Q |
133 |
aaaataaccttcaagaattatctctcaaaacctttagaaacacaaaatgtcgttcagaggttatctcccgaacggtttgttcatttgtaaaggaccaaaa |
232 |
Q |
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| T |
36940285 |
aaaataaccttcaagagttatctctcaaa-cctttagaaacacaaaatgt-gttcagagattatctccaaaacagtttacgcatttgtaaagg-ccaaaa |
36940189 |
T |
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| Q |
233 |
gagcaatcatcctctttcatacccttcgagtgggacgagatgcccgagttaatttattctcttcagtggtgtggggaaccgagatatacctatagatctt |
332 |
Q |
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| T |
36940188 |
gagcgatcatcctctttcatagtcttcgagtgggacgagatgcccgagttaatttattcttttatgtggtgtgaggaaccgagatatacctatagagctt |
36940089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 112 - 155
Target Start/End: Complemental strand, 39024516 - 39024473
Alignment:
| Q |
112 |
cctatttgctctttatcctaaaaaataaccttcaagaattatct |
155 |
Q |
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| T |
39024516 |
cctatttactctttatcctaaaaaataacctttaagagttatct |
39024473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 112 - 220
Target Start/End: Complemental strand, 8359947 - 8359839
Alignment:
| Q |
112 |
cctatttgctctttatcctaaaaaataaccttcaagaattatctctcaaaacctttagaaacacaaaatgtcgttcagaggttatctcccgaacggtttg |
211 |
Q |
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| T |
8359947 |
cctatttgttccttatcctaagaaacaaccttcaagagttatctatcaaaaccttaaaaaacataaaatgttattcgaaagttatctcctgaacggtttg |
8359848 |
T |
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| Q |
212 |
ttcatttgt |
220 |
Q |
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||||||| |
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| T |
8359847 |
cacatttgt |
8359839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 92 - 188
Target Start/End: Original strand, 32086698 - 32086794
Alignment:
| Q |
92 |
gatgattgctcttttgaccgcctatttgctctttatcctaaaaaataaccttcaagaattatctctcaaaacctttagaaacacaaaatgtcgttca |
188 |
Q |
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| T |
32086698 |
gatggttgctcttttggcctcctattcgctctttatcctgaaaaataaccttccagagttgtctctggaagccttttaaaacacagaatatcgttca |
32086794 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 91 - 178
Target Start/End: Complemental strand, 33992383 - 33992297
Alignment:
| Q |
91 |
tgatgattgctcttttgaccgcctatttgctctttatcctaaaaaataaccttcaagaattatctctcaaaacctttagaaacacaaa |
178 |
Q |
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| T |
33992383 |
tgatggttgctcgtttggccccttatttgctctttatcctgaaaaacaacattc-agatttatctcccgaaacctttaaaaacacaaa |
33992297 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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