View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_28 (Length: 313)
Name: NF11095_low_28
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_28 |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 1 - 295
Target Start/End: Complemental strand, 7035851 - 7035572
Alignment:
| Q |
1 |
atattattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtc |
100 |
Q |
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| T |
7035851 |
atattattcataattttttattccacgtaggtgttttatatatctcccgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtc |
7035752 |
T |
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| Q |
101 |
taaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctgtttgtttgaaggc |
200 |
Q |
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| T |
7035751 |
taaaaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctg----tttgaaggc |
7035656 |
T |
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| Q |
201 |
tatttcattctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaacacatgttttttactggcatgcttc |
295 |
Q |
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| T |
7035655 |
tatttcattctacctttgttgaggggaaaattctttgatatgtcaag-----------caatgtttttaacacatgttttttactggcatgcttc |
7035572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 4 - 246
Target Start/End: Complemental strand, 7897088 - 7896854
Alignment:
| Q |
4 |
ttattcataattttttattctacgtaggtgttttatatatctcctgaagtgttggagaaactgaagcagcaacagaaggttaatcttctcccttgtctaa |
103 |
Q |
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| T |
7897088 |
ttattcataattttttattctacgtaggtttttg---tatctcccgaagtgttggagacactgaagcagcaacaaaaggttaatattctcccttgtctaa |
7896992 |
T |
|
| Q |
104 |
aaaatgtgtgtatctcaagtatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctgtttgtttgaaggctat |
203 |
Q |
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| T |
7896991 |
aaa-tgtgtgtatctcaattatgtgggttagctatcaattgcaattgaatttcttactattggattcttaaccgaaagaggctg----tttgaaggctat |
7896897 |
T |
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| Q |
204 |
ttcattctacctttgttgaggggaaaattctttgatatgtcaa |
246 |
Q |
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| T |
7896896 |
ttcattctacctttgttgaggggaaaattctttgatatgtcaa |
7896854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 79 - 280
Target Start/End: Complemental strand, 7039336 - 7039133
Alignment:
| Q |
79 |
aaggttaatcttctcccttgtctaaaaaatgtgtgtatctcaagtatgtgggttagctatc----aattgcaa-ttgaatttctt-actattggattctt |
172 |
Q |
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| T |
7039336 |
aaggtttatcctctcccttgtcctaaaaatat-tgtatctcaagtatgtgggctagctatctatcaattgcaagttgaatttatttactatcggattctt |
7039238 |
T |
|
| Q |
173 |
aaccgaa-agaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattctttgatatgtcaagctacttataatcaatgtttttaac |
271 |
Q |
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| T |
7039237 |
aaccgaacagaggctgtttat----aggctatttcatactacccttgttgaggggaaaattctttgaaatgtcaagccactcatattcaatgtttttcac |
7039142 |
T |
|
| Q |
272 |
acatgtttt |
280 |
Q |
| |
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| T |
7039141 |
acatgtttt |
7039133 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 290
Target Start/End: Complemental strand, 7896857 - 7896825
Alignment:
| Q |
258 |
tcaatgtttttaacacatgttttttactggcat |
290 |
Q |
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| T |
7896857 |
tcaatgtttttaacacatgttttttactggcat |
7896825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 148 - 238
Target Start/End: Complemental strand, 29380169 - 29380083
Alignment:
| Q |
148 |
ttgaatttcttactattggattcttaaccgaa-agaggctgtttgtttgaaggctatttcattctacctttgttgaggggaaaattctttga |
238 |
Q |
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| T |
29380169 |
ttgaatttcttactattggatt-ttaacccaacagaggctgttta----aaggctatttcatactacccttgttgaagggaaaattctttga |
29380083 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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