View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_29 (Length: 305)
Name: NF11095_low_29
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_29 |
 | |
|
| [»] scaffold0341 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 294; Significance: 1e-165; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 1 - 294
Target Start/End: Original strand, 47744363 - 47744656
Alignment:
| Q |
1 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744363 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctag |
47744462 |
T |
|
| Q |
101 |
acaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744463 |
acaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
47744562 |
T |
|
| Q |
201 |
aaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataataagtattttgatgaagaaagtgatg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47744563 |
aaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataataagtattttgatgaagaaagtgatg |
47744656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 1 - 283
Target Start/End: Original strand, 47716599 - 47716881
Alignment:
| Q |
1 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
47716599 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattaggaacaaattcatagaaaagcaatctttctcttccttctag |
47716698 |
T |
|
| Q |
101 |
acaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47716699 |
acaaaaaccaagtagtcaaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
47716798 |
T |
|
| Q |
201 |
aaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataataagtattttgatga |
283 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||| ||| |||| |
|
|
| T |
47716799 |
aaccttttgatcgcaatcacttgtccaccggcgagtataccctgtaaatatatttcatttgtgtataataagtactttaatga |
47716881 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 47711848 - 47712115
Alignment:
| Q |
1 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctag |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| |||||||||||||||||||||||| |
|
|
| T |
47711848 |
caatctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacaaattcatagataagcaatctttctcttccttctag |
47711947 |
T |
|
| Q |
101 |
acaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47711948 |
acaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgac |
47712047 |
T |
|
| Q |
201 |
aaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataa |
268 |
Q |
| |
|
||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47712048 |
aaccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataa |
47712115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 3 - 268
Target Start/End: Original strand, 47758748 - 47759013
Alignment:
| Q |
3 |
atctaataaagcatatattatggcctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagac |
102 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |
|
|
| T |
47758748 |
atctaataaagcatatattatggcctaccaaatataaaataatcaagacttttattcggaacatattcataaacaagcaatctttctcttccttccagac |
47758847 |
T |
|
| Q |
103 |
aaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaa |
202 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
47758848 |
aaaaaccaagtagtcgaactaaatttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaacatccccctgtcctgaatttgttgacaa |
47758947 |
T |
|
| Q |
203 |
ccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatttcatttctgtataa |
268 |
Q |
| |
|
||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||| ||||||| |
|
|
| T |
47758948 |
ccttttgactgcaatgacttgtccaccggcaagtataccctgcaaatatatttcatttgtgtataa |
47759013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 33 - 227
Target Start/End: Complemental strand, 47774686 - 47774492
Alignment:
| Q |
33 |
aatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgat |
132 |
Q |
| |
|
||||| || ||||||||||||||||||| |||||||||||| | ||||| | ||||||| ||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
47774686 |
aatatgaagtaatcaagacttttatttgtaacatattcataaataagcagtttttctctcccttctaaactgaaaccaagtagcctaactaaatttcgat |
47774587 |
T |
|
| Q |
133 |
gttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
||||||| || || |||||||| |||||||| |||||||| | ||| ||||| | |||| | | ||||| |||||||||||||||| ||||||| |
|
|
| T |
47774586 |
gttgaagtttggctactaaaagtacttcatttttaaattccacatctccttggtcagaatctttggacaatcttttgaccgcaatcatttgtcca |
47774492 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 6498077 - 6498276
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
||||||| || |||||||| |||||||| ||| ||||| ||||||| ||||| | |||||||||||||||||| | ||||| ||||||||||||||||| |
|
|
| T |
6498077 |
taccaaaaatgaaataatcgagacttttgttttgaacaaattcatatacaagtactctttctcttccttctagtgagaaaccgagtagtctaactaaatt |
6498176 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
||| |||||||||||||| || ||||| || ||||||||||| || ||| |||||||| ||| | ||||||||||||| || |||||| |||||||| |
|
|
| T |
6498177 |
tcggtgttgaagcttagccaccaaaagtacctcattcttaaactccgaatctccttgtcccgaactcattgacaaccttttaacagcaatctcttgtcca |
6498276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 26 - 227
Target Start/End: Original strand, 6503394 - 6503595
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| |||| | ||||| ||||| | |||||||||||||||||| |||||||| |||| |||||||| | |
|
|
| T |
6503394 |
cctaccaaaaataaagtaatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactaga |
6503493 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtc |
225 |
Q |
| |
|
|||| |||||||| ||||| ||||||| ||||||||||||||| || ||| |||||||| ||||| |||| ||||||||||| |||| | |||||| |
|
|
| T |
6503494 |
tttctgtgttgaagtttagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaacctcttgtc |
6503593 |
T |
|
| Q |
226 |
ca |
227 |
Q |
| |
|
|| |
|
|
| T |
6503594 |
ca |
6503595 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 61 - 254
Target Start/End: Complemental strand, 6525050 - 6524857
Alignment:
| Q |
61 |
gaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcgactaaaagcacttc |
160 |
Q |
| |
|
||||| ||||||| ||||| | ||||||||||||||||| ||| ||||||||||| |||||||| |||||||||||||| ||||| ||||||| ||||| |
|
|
| T |
6525050 |
gaacaaattcatatacaagtagtctttctcttccttctatacagaaaccaagtagcctaactaagtttcgatgttgaagtttagccactaaaactacttc |
6524951 |
T |
|
| Q |
161 |
attcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtccaccggcgagtataccctgcaaatatatt |
254 |
Q |
| |
|
|||||||||||| | ||| ||||| || |||| | |||||||||||||| ||||| |||||||| || |||| ||||||| ||||||||| |
|
|
| T |
6524950 |
attcttaaattctaaatctccttggccagaatccctcgacaaccttttgacaccaatctcttgtccattggggagtctaccctgaaaatatatt |
6524857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 6511014 - 6511204
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
6511014 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
6511113 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaa |
216 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| |||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
6511114 |
tttcggtgttgaagtttagccactaaaaatacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
6511204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 227
Target Start/End: Complemental strand, 47770783 - 47770584
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | |||||| || ||||||| || |||||||| |||||||||||||| |
|
|
| T |
47770783 |
taccaaatatgaagtaatcaagacttttatttgtaacaaattcataaataagaagtctttcactcccttctaaactgaaaccaagaagtctaactaaatt |
47770684 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
||||||||||||||| || ||||| | |||||||| |||||||| | ||| ||||| | |||| | || |||| ||||| || ||||||| ||||||| |
|
|
| T |
47770683 |
tcgatgttgaagcttggctactaataatacttcatttttaaattccacatctccttggctggaatcttttaacaatctttttacagcaatcatttgtcca |
47770584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 26 - 210
Target Start/End: Original strand, 6515437 - 6515621
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | || || | ||| | |||||| || |||||||| || ||||| |||| |||||||||| |
|
|
| T |
6515437 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcgtatataagtagtctttcactcccttctaggcagaaaccgagtaatctaactaaa |
6515536 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttga |
210 |
Q |
| |
|
||||| |||||||| ||||| | |||| ||| ||||||||||| || | ||| |||||||| ||||| |||| |||||||||| |
|
|
| T |
6515537 |
tttcggtgttgaagtttagccaggaaaaacacctcattcttaaactctagatctccttgtccagaattcattgataaccttttga |
6515621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 142
Target Start/End: Complemental strand, 47689917 - 47689803
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| | |||||||||||||||||| | ||| | ||||| | || | |||||||||| || || ||| ||||| |||||| |||||||||| |
|
|
| T |
47689917 |
taccaaatatgatataatcaagacttttattggagacaaactcataaattagtagtctttctcttttttgtaaacagaaacctagtagtttaactaaatt |
47689818 |
T |
|
| Q |
128 |
tcgatgttgaagctt |
142 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
47689817 |
tcgatgttgaagctt |
47689803 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 92; Significance: 1e-44; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 28 - 219
Target Start/End: Original strand, 27369137 - 27369328
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| || ||||||||||||||||||| |||| ||||||| | ||| | ||||||||| ||||||||||| ||||||||||| ||||||| ||| |
|
|
| T |
27369137 |
taccaaatatgaagtaatcaagacttttatttgaaacaaattcataaataagtagtctttctctcccttctagacagaaaccaagtagcctaactagatt |
27369236 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatca |
219 |
Q |
| |
|
|||||||||||| || || |||||||| |||||||| ||||| |||| ||| ||||| | |||||||||||||||||||| || ||||||| |
|
|
| T |
27369237 |
tcgatgttgaagtttggctactaaaagtacttcatttttaaactcaacatctccttggtcagaatttgttgacaaccttttcacagcaatca |
27369328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 28829285 - 28829484
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| ||||||||||||| ||||||||||| ||||| | | ||||||||| |||||||||||||| |
|
|
| T |
28829285 |
taccaaatatgaagtagtcaagacttttattaggaacaaattcatagacaagtaatctttctctcccttcaacagtaaaaccaaggagtctaactaaatt |
28829384 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
||| |||||||| || || || ||| | ||||| ||||||||||| | ||| ||||| || |||||| | || |||||||| |||||||||||||||||| |
|
|
| T |
28829385 |
tcggtgttgaagtttggccaccaaacgtacttcgttcttaaattctagatctccttgaccagaatttatggataaccttttcaccgcaatcacttgtcca |
28829484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 28860321 - 28860520
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||| | ||||||||||||| | ||||||||| ||||| | | |||||||||||||||||||||||| |
|
|
| T |
28860321 |
taccaaatatgaagtagtcaagacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaactaaatt |
28860420 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
|| |||||||| || || | ||||||||||||||||||||| || |||| ||||| || ||||| | ||||||||||| || || ||| |||||||| |
|
|
| T |
28860421 |
ccggtgttgaagtttggccattaaaagcacttcattcttaaactctctatctccttggccagaattaatggacaaccttttaacagcgatcgcttgtcca |
28860520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 28 - 227
Target Start/End: Original strand, 28854962 - 28855161
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatt |
127 |
Q |
| |
|
|||||||||| || || |||||||||||||| |||||| |||||||||| || | ||||||||| ||||| | | ||||||||||| ||||||||||| |
|
|
| T |
28854962 |
taccaaatatgaagtagtcaagacttttattgggaacaaattcatagactagtagtctttctctcccttcgatagtaaaaccaagtaacctaactaaatt |
28855061 |
T |
|
| Q |
128 |
tcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
| |||||||||| ||||| | || | | ||||||||||||||| | ||| ||||| || ||||| | |||||||||||||| ||||||||||||||| |
|
|
| T |
28855062 |
ttgatgttgaagtttagccatcaagattaattcattcttaaattccagatctccttggccagaattcatggacaaccttttgacggcaatcacttgtcca |
28855161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 48 - 208
Target Start/End: Original strand, 28874911 - 28875071
Alignment:
| Q |
48 |
agacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagcttagcga |
147 |
Q |
| |
|
||||||||||| |||| | ||||||||||||| | ||||||||| ||||| | | |||||||||||||||||| ||||| || |||||||| || || | |
|
|
| T |
28874911 |
agacttttattgggaataaattcatagacaagtagtctttctctcccttcaatagtaaaaccaagtagtctaaccaaattccggtgttgaagtttggcca |
28875010 |
T |
|
| Q |
148 |
ctaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaacctttt |
208 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||| || ||||| | ||||||||||| |
|
|
| T |
28875011 |
ttaaaagcacttcattcttaaattctatatctccttggccagaattcatggacaacctttt |
28875071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 81
Target Start/End: Original strand, 454842 - 454895
Alignment:
| Q |
28 |
taccaaatataaaataatcaagacttttatttggaacatattcatagacaagca |
81 |
Q |
| |
|
||||||||| || |||||||||||||||||| | ||||||||||| ||||||| |
|
|
| T |
454842 |
taccaaataagaagtaatcaagacttttatttagtacatattcataaacaagca |
454895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341 (Bit Score: 71; Significance: 4e-32; HSPs: 2)
Name: scaffold0341
Description:
Target: scaffold0341; HSP #1
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 26 - 216
Target Start/End: Original strand, 12695 - 12884
Alignment:
| Q |
26 |
cctaccaaatataaaataatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaa |
125 |
Q |
| |
|
||||||||| ||||| ||||||||||||||||| ||||| | ||||| | ||| | |||||||||||||||||| || ||||| |||| ||| |||||| |
|
|
| T |
12695 |
cctaccaaaaataaagtaatcaagacttttattatgaacaaactcatatataagtagtctttctcttccttctaggcagaaaccgagtaatcttactaaa |
12794 |
T |
|
| Q |
126 |
tttcgatgttgaagcttagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaa |
216 |
Q |
| |
|
||||| |||||||| ||||| ||||||| |||||||||||||| || | ||| |||||||| ||||| |||| ||||||||||| |||| |
|
|
| T |
12795 |
tttcggtgttgaagtttagccactaaaa-tacttcattcttaaactctagatctccttgtccggaattcattgataaccttttgacagcaa |
12884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0341; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 42 - 227
Target Start/End: Original strand, 5092 - 5277
Alignment:
| Q |
42 |
taatcaagacttttatttggaacatattcatagacaagcaatctttctcttccttctagacaaaaaccaagtagtctaactaaatttcgatgttgaagct |
141 |
Q |
| |
|
||||||||||||||||| |||| | ||||| ||||| | |||||||||||||||||| |||||||| |||| |||||||| ||||| |||||||| | |
|
|
| T |
5092 |
taatcaagacttttattacaaacaaactcatatacaagaagtctttctcttccttctaggcaaaaaccgagtaatctaactagatttctgtgttgaagtt |
5191 |
T |
|
| Q |
142 |
tagcgactaaaagcacttcattcttaaattcaatatccccttgtcctgaatttgttgacaaccttttgaccgcaatcacttgtcca |
227 |
Q |
| |
|
|||| ||||||| ||||||||||||||| || ||| |||||||| ||||| |||| ||||||||||| |||| | |||||||| |
|
|
| T |
5192 |
tagcaactaaaaacacttcattcttaaactctgaatctccttgtccagaattcattgataaccttttgacagcaacctcttgtcca |
5277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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