View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11095_low_3 (Length: 920)

Name: NF11095_low_3
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11095_low_3
NF11095_low_3
[»] chr1 (1 HSPs)
chr1 (18-910)||(10032378-10033260)
[»] chr4 (1 HSPs)
chr4 (615-912)||(41067936-41068233)
[»] chr3 (3 HSPs)
chr3 (631-912)||(8479570-8479851)
chr3 (18-152)||(26046109-26046243)
chr3 (657-831)||(10996811-10996984)
[»] chr5 (4 HSPs)
chr5 (631-912)||(19936349-19936630)
chr5 (307-548)||(29924688-29924935)
chr5 (189-272)||(29926841-29926924)
chr5 (547-600)||(29924242-29924295)
[»] chr6 (3 HSPs)
chr6 (18-272)||(15952199-15952459)
chr6 (314-447)||(15952551-15952684)
chr6 (484-587)||(15952720-15952823)
[»] scaffold0911 (1 HSPs)
scaffold0911 (616-815)||(2738-2934)
[»] chr2 (3 HSPs)
chr2 (195-272)||(1637263-1637340)
chr2 (307-462)||(1636777-1636932)
chr2 (484-548)||(1636685-1636749)
[»] scaffold0196 (1 HSPs)
scaffold0196 (615-743)||(224-352)
[»] chr8 (1 HSPs)
chr8 (620-821)||(26657175-26657379)


Alignment Details
Target: chr1 (Bit Score: 761; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 761; E-Value: 0
Query Start/End: Original strand, 18 - 910
Target Start/End: Original strand, 10032378 - 10033260
Alignment:
Q  18 aaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctccttattcaactttgatactaagcatcccaa 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||    
T  10032378 aaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgt---ccttattcaactttgatactaagcatcccaa 10032474  T
Q  118 atttgcattgaactccaaagctacatcattgtaatggccagcatgcaccacatggaacagaagnnnnnnnn-ggcttcaccagcatcagcatggtgttcc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||         ||||||||||||||||||||||||||||    
T  10032475 atttgcattgaactccaaagctacatcattgtaatggccagcatgcaccacttggaacagaaggaaaaaaaaggcttcaccagcatcagcatggtgttcc 10032574  T
Q  217 ataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaaagatctgcaaacatggcttcaaagctagttggacgacaaccccc 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10032575 ataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaaagatctgcaaacatggcttcagagctagttggacgacaaccccc 10032674  T
Q  317 aagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctactgtcatatttgacaagattg 416  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  ||||||||||||||||||||    
T  10032675 aagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgttgttgtcatatttgacaagattg 10032774  T
Q  417 tatacaccattgcccgcaagagaacagaaccatgtaaacaatgcagcaactttactagttccatcacttccatacttttgtaaactgaacaaaacgacaa 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||         |||||||||||||||||||||||||||    
T  10032775 tatacaccattgcccgcaagagaacagaaccatgtaaacaatgcagcaactttacttgttccat---------acttttgtaaactgaacaaaacgacaa 10032865  T
Q  517 cgcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgttaacagatgatagtactgacattgctatac-gcg 615  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||    
T  10032866 ggcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgttaacaaatgatagtactgacattgctataccgcg 10032965  T
Q  616 gatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgct 715  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  10032966 gatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacatgctttttcaatgtttgct 10033065  T
Q  716 gctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacattttt 815  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  10033066 gctgttttttagataaaacttgcgtgaatccttcgcttgccatacgttgatcatactcccgaatgtgagcccataaatccaagtcattttgcacattttt 10033165  T
Q  816 caaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctg 910  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  10033166 caaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtttctg 10033260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 238; Significance: 1e-131; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 615 - 912
Target Start/End: Complemental strand, 41068233 - 41067936
Alignment:
Q  615 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc 714  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||    
T  41068233 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgc 41068134  T
Q  715 tgctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttt 814  Q
    |||||||||||||| ||||||| |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||    
T  41068133 tgctgttttttagacaaaacttgcgtgaatccttcggctgccatacgttgatcttactcccgaatgcgagcccataaatccaagtcattttgaacatttt 41068034  T
Q  815 tcaaaacctggatttccctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgct 912  Q
    || |||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||  |||||||| |||| ||||||||||    
T  41068033 tcgaaacctggatttccttggactgaattgaaacttcacgcacctgatcagcagtaaactcattagctgctgcacttgaattagcttctgtctctgct 41067936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 631 - 912
Target Start/End: Complemental strand, 8479851 - 8479570
Alignment:
Q  631 gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata 730  Q
    ||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||||||||| |    
T  8479851 gaaattcattgagaagggggagttgaacccttcacacgggtgttgtacgaagttttccctaaaacttgctttttcaatgtttgctgctgttttttagaca 8479752  T
Q  731 aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc 830  Q
    |||||| |||||||||||||  |||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||    
T  8479751 aaacttgcgtgaatccttcggctgccatacgttgatcatactcccgaatgcgagcctataaatccaagtcattttgaacatttttcgaaacctggatttc 8479652  T
Q  831 cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgct 912  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| ||||||||||    
T  8479651 cttggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttctgtctctgct 8479570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 103; E-Value: 9e-51
Query Start/End: Original strand, 18 - 152
Target Start/End: Complemental strand, 26046243 - 26046109
Alignment:
Q  18 aaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctccttattcaactttgatactaagcatcccaa 117  Q
    ||||||||||||||||||| |||| |||||||| ||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||    
T  26046243 aaggttgtgcaacaatttgcagtatcaaatcataagcatttgcatctaccaattgaaatccatggaggtccttattcaactttgatactaagcatcccaa 26046144  T
Q  118 atttgcattgaactccaaagctacatcattgtaat 152  Q
     |||||||||||||| |||||||||||||||||||    
T  26046143 ttttgcattgaactctaaagctacatcattgtaat 26046109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 657 - 831
Target Start/End: Complemental strand, 10996984 - 10996811
Alignment:
Q  657 acccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagataaaacttacgtgaatccttcgcttgcc 756  Q
    |||||| ||||||||||| ||||| ||||| ||||| || | |||||||| ||  ||||||||||| || |||| ||||| ||| ||  |||||   |||    
T  10996984 accctttgcacgggtgttatacgaggcttttcctaacactttctttttcactgcctgctgctgtttcttggatagaacttgcgtaaaatcttcgtccgcc 10996885  T
Q  757 atacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttcc 831  Q
    || | ||||||||| || ||||| ||  ||||| ||||||||||  |||| | ||||||| ||||||| ||||||    
T  10996884 atccattgatcatattcacgaattcggacccat-aatccaagtccctttggaaatttttcgaaacctgaatttcc 10996811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 631 - 912
Target Start/End: Original strand, 19936349 - 19936630
Alignment:
Q  631 gaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctgctgttttttagata 730  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |    
T  19936349 gaaattcattgagaagggggagttgaacccttcgcacgggtgttgtacgaagctttccctaaaacttgctttttcaatgtttgctgctgttttttagaca 19936448  T
Q  731 aaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttcaaaacctggatttc 830  Q
    |||| | |||||||||||||   ||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||    
T  19936449 aaacctgcgtgaatccttcggcggccatacattgatcatactcccgaatgcgagcccataaatccaagtcattttgaacatttttcgaaacctggatttc 19936548  T
Q  831 cctggactgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgttcttgaattcgcttatgtctctgct 912  Q
    | |||| |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||| || |||||||    
T  19936549 cttggattgaattgaaacttcacgcacctgatcagcagtaagctcattagctgctgcacttgaattcgcttttgcctctgct 19936630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 307 - 548
Target Start/End: Complemental strand, 29924935 - 29924688
Alignment:
Q  307 gacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctactgtcatattt 406  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  29924935 gacagcccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatattt 29924836  T
Q  407 gacaagattgtatacaccattgcccgcaagagaacagaaccatgtaaacaatgcagcaactttactagttcca---tcac---ttccatacttttgtaaa 500  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||   ||  |  |   |||   | ||   |||||||||| ||||||    
T  29924835 gacaagattgtatacaccattgcccgcaagagaacagaaccatataaacaatgcaggtcctacagcaagcccaactttacttgttccatacttctgtaaa 29924736  T
Q  501 ctgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatct 548  Q
    |||||||||||||||| |||||||| ||||||||||||||||||||||    
T  29924735 ctgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatct 29924688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 189 - 272
Target Start/End: Complemental strand, 29926924 - 29926841
Alignment:
Q  189 ggcttcaccagcatcagcatggtgttccataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaa 272  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29926924 ggcttcaccagcatcagcatggtgttccataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaa 29926841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 547 - 600
Target Start/End: Complemental strand, 29924295 - 29924242
Alignment:
Q  547 cttgttgaattgcatctaccccaaccttcaagccgttaacagatgatagtactg 600  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  29924295 cttgttgaattgcatctaccccaaccttcaagccattaacagatgatagtactg 29924242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 186; Significance: 1e-100; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 18 - 272
Target Start/End: Original strand, 15952199 - 15952459
Alignment:
Q  18 aaggttgtgcaacaatttgtagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgctccttattcaactttgatactaagcatcccaa 117  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  15952199 aaggttgtgcaacaatttgcagtagcaaatcatcagcatttgcatctaccaattgaaatccatcgtgttccttattcaactttgatactaagcatcccaa 15952298  T
Q  118 atttgcattgaactccaaagctacatcattgtaatggccagcatgcaccacatggaacag------aagnnnnnnnnggcttcaccagcatcagcatggt 211  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| ||      |||         ||||||||||||||||||||||    
T  15952299 atttgcattgaactccaaagctacatcattgtaatggccagaatgcaccacttggaatagaagaaaaagaaaaaaaaagcttcaccagcatcagcatggt 15952398  T
Q  212 gttccataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaa 272  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  15952399 gttccataaggtatgcaacttgacccaaataacccaataataggcacggcaaaacaagaaa 15952459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 122; E-Value: 4e-62
Query Start/End: Original strand, 314 - 447
Target Start/End: Original strand, 15952551 - 15952684
Alignment:
Q  314 cccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctactgtcatatttgacaaga 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  15952551 cccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctgctgtcatatttgacaaga 15952650  T
Q  414 ttgtatacaccattgcccgcaagagaacagaacc 447  Q
    | |||||||||||| |||||||||||||||||||    
T  15952651 tagtatacaccattacccgcaagagaacagaacc 15952684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 88; E-Value: 8e-42
Query Start/End: Original strand, 484 - 587
Target Start/End: Original strand, 15952720 - 15952823
Alignment:
Q  484 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatcttgttgaattgcatctaccccaaccttcaagccgtt 583  Q
    |||||||||| |||||||||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  15952720 ttccatacttctgtaaactgaacaaaacgacaaggcaagcaacagaaatcatcaccacttcatcttgtcgaattgcatctaccccaaccttcaagccgtt 15952819  T
Q  584 aaca 587  Q
    ||||    
T  15952820 aaca 15952823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0911 (Bit Score: 94; Significance: 2e-45; HSPs: 1)
Name: scaffold0911
Description:

Target: scaffold0911; HSP #1
Raw Score: 94; E-Value: 2e-45
Query Start/End: Original strand, 616 - 815
Target Start/End: Original strand, 2738 - 2934
Alignment:
Q  616 gatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgct 715  Q
    ||||||||||||||||| | |||||||| ||| |||||   |||||| |||||||| || ||||||||||| || | ||| ||||||||||||||||| |    
T  2738 gatgttccaataaaggacactcattgaggaggaggagt---accctttgcacgggttttatacgaagctttacccagaacttgctttttcaatgtttgtt 2834  T
Q  716 gctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacattttt 815  Q
    |||| || || ||||| |||| |||||| |||||  ||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||    
T  2835 gctgcttcttggataacacttgcgtgaagccttctgttgccatccgttgatcatactcgcgaatgcgagcccataaatccaagtcattttgtacattttt 2934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 66; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 66; E-Value: 1e-28
Query Start/End: Original strand, 195 - 272
Target Start/End: Complemental strand, 1637340 - 1637263
Alignment:
Q  195 accagcatcagcatggtgttccataaggtatgcagcttgacccaaataacccaataataggcacggcaaaacaagaaa 272  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  1637340 accagcatcagcatggttttccataaggtatgcagcttgacccaaataacccaatagcaggcacggcaaaacaagaaa 1637263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 307 - 462
Target Start/End: Complemental strand, 1636932 - 1636777
Alignment:
Q  307 gacaacccccaagagaataccatgctttagttgaattccttgcaaagaaataatagatgtgaataggattaaaagccctaaaaacgctactgtcatattt 406  Q
    |||||||||| ||||||||||||||||||||||| |||||    |||||||| ||||| ||||| ||||| || ||||| || || || |||||||||||    
T  1636932 gacaacccccgagagaataccatgctttagttgagttcctcttgaagaaatagtagatatgaatgggattgaatgccctcaagacacttctgtcatattt 1636833  T
Q  407 gacaagattgtatacaccattgcccgcaagagaacagaaccatgtaaacaatgcag 462  Q
    || |||||||||||  ||  | || ||||||||||| |||||| | ||||| ||||    
T  1636832 gagaagattgtatatcccgataccggcaagagaacaaaaccatatgaacaaagcag 1636777  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 484 - 548
Target Start/End: Complemental strand, 1636749 - 1636685
Alignment:
Q  484 ttccatacttttgtaaactgaacaaaacgacaacgcaagcaatagaaatcatcaccacttcatct 548  Q
    ||||||||||||||| |||||||||||| |  | ||| ||||  |||||||||||||||||||||    
T  1636749 ttccatacttttgtacactgaacaaaacaatcaggcaggcaactgaaatcatcaccacttcatct 1636685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0196 (Bit Score: 49; Significance: 2e-18; HSPs: 1)
Name: scaffold0196
Description:

Target: scaffold0196; HSP #1
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 615 - 743
Target Start/End: Complemental strand, 352 - 224
Alignment:
Q  615 ggatgttccaataaaggaaattcattgagaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgc 714  Q
    |||||||||||||||||| |||||||||||| |  |||    |||||| ||||||||||| ||||||||||| || | ||| |||||||||||||||||     
T  352 ggatgttccaataaaggacattcattgagaatgatgaggattaccctttgcacgggtgttatacgaagctttacccataacttgctttttcaatgtttgt 253  T
Q  715 tgctgttttttagataaaacttacgtgaa 743  Q
    ||||| || || ||||| |||| ||||||    
T  252 tgctgcttcttggataacacttgcgtgaa 224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 620 - 821
Target Start/End: Complemental strand, 26657379 - 26657175
Alignment:
Q  620 ttccaataaaggaaattcat--tga-gaagggggagttgaacccttcgcacgggtgttttacgaagctttccctaaaacatgctttttcaatgtttgctg 716  Q
    ||||||||||||||||||||  ||| ||||  ||||  | |||||| || |||||||| |||| ||| || ||||| || ||| |||| | || ||| ||    
T  26657379 ttccaataaaggaaattcatgatgaagaagatggaggagtaccctttgcccgggtgttgtacggagcctttcctaacacttgccttttaactgcttgttg 26657280  T
Q  717 ctgttttttagataaaacttacgtgaatccttcgcttgccatacgttgatcatactcccgaatgcgagcccataaatccaagtcattttgcacatttttc 816  Q
    ||| ||||| ||||||||||  ||||| |||||    ||||| ||||||||||| || ||||| || ||| |||||||||| ||||| || ||||| |||    
T  26657279 ctgctttttggataaaacttgtgtgaagccttcatccgccatccgttgatcatattcacgaatacgtgcctataaatccaaatcattctggacattcttc 26657180  T
Q  817 aaaac 821  Q
     ||||    
T  26657179 gaaac 26657175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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