View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_30 (Length: 289)
Name: NF11095_low_30
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_30 |
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Alignment Details
Target: chr7 (Bit Score: 153; Significance: 4e-81; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 10 - 273
Target Start/End: Complemental strand, 48870570 - 48870311
Alignment:
| Q |
10 |
ttgttgagagaaaacaaaaacaaatatgacttagtaatgagtaacgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgaga |
109 |
Q |
| |
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||||||||||||||||||||||| | |||| ||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48870570 |
ttgttgagagaaaacaaaaacaattttgacctagtaatcagtaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgaga |
48870471 |
T |
|
| Q |
110 |
tggacctacctgtcataagtaagttatgcaattctacaacattatgtttactgatacatttataacaaattatgaaatgttttaattacaaagttttgtt |
209 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||||||||||| ||||||| | |||||| ||||| | ||||| | |
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| T |
48870470 |
tggacctacctgtcataggtaagttatgcaattctccaatcttatg-ttactgatacatttataaaaaattat--agtgttttgattac-agtttttgat |
48870375 |
T |
|
| Q |
210 |
ttcagtgttttctgaaaatgatgatcctaagctggtgatgaaagcaattgatcttggtgcttgt |
273 |
Q |
| |
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|||||||||||||| |||||||||||| | | |||||||||||| |||||||| |||||||||| |
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| T |
48870374 |
ttcagtgttttctgcaaatgatgatccaaggatggtgatgaaaggaattgatcatggtgcttgt |
48870311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 5 - 273
Target Start/End: Original strand, 2904607 - 2904875
Alignment:
| Q |
5 |
tgaatttgttgagagaaaacaaaaacaaatatgacttagtaatgagtaacgttcatatgccagacatggatggatttaagcttcttgagcttgttggact |
104 |
Q |
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|||| ||||||||||||||||||| ||| | |||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2904607 |
tgaacttgttgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttggact |
2904706 |
T |
|
| Q |
105 |
tgagatggacctacctgtcataagtaagttatgcaattctacaacattatgtttactgatacatttataacaaattatgaaatgttttaattacaaagt- |
203 |
Q |
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|
||||||||||||||||||||| ||||||||||| |||||| ||| ||||| ||| |||| ||| ||| ||||||| | ||||| |||| ||| | |
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| T |
2904707 |
tgagatggacctacctgtcatcagtaagttatgaaattcttcaatcttatg-ttattgatccatgcatagaaaattatttagggttttgattaaaaaatg |
2904805 |
T |
|
| Q |
204 |
tttgttttcagtgttttctgaaaatgatgatcctaagctggtgatgaaagcaattgatcttggtgcttgt |
273 |
Q |
| |
|
|||| ||||||||||||||| |||||||||||| ||| |||||||||||| |||||||| |||||||||| |
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|
| T |
2904806 |
tttgatttcagtgttttctgcaaatgatgatccaaagatggtgatgaaaggaattgatcatggtgcttgt |
2904875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 2888500 - 2888778
Alignment:
| Q |
1 |
gcactgaatttgttgagagaaaacaaaaacaaatatgacttagtaatgagtaacgttcatatgccagacatggatggatttaagcttcttgagcttgttg |
100 |
Q |
| |
|
|||||||| || |||||||||||||||| ||| | |||| ||||||| || || |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2888500 |
gcactgaacttattgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggatggatttaagcttcttgagcttgttg |
2888599 |
T |
|
| Q |
101 |
gacttgagatggacctacctgtcataagtaagttatgcaattctacaacat-----tatgtttactgatacatttataacaaattatgaaatgttttaat |
195 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||| ||| | ||| ||| |||| ||| |||| ||||||| | ||||| || |
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| T |
2888600 |
gacttgagatggatttacctgtcataagtaagttatgcaattcttcaatcttattctattgttattgatccatgcataaaaaattatttagggttttgat |
2888699 |
T |
|
| Q |
196 |
tacaaagt-tttgttttcagtgttttctgaaaatgatgatcctaagctggtgatgaaagcaattgatcttggtgcttgt |
273 |
Q |
| |
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| ||| | |||| ||||||||||||||| |||||||||||| ||| |||||||||||| |||||| | |||||||||| |
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| T |
2888700 |
caaaaaatgtttgatttcagtgttttctgcaaatgatgatccaaagatggtgatgaaaggaattgaacatggtgcttgt |
2888778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 11 - 273
Target Start/End: Original strand, 2893105 - 2893366
Alignment:
| Q |
11 |
tgttgagagaaaacaaaaacaaatatgacttagtaatgagtaacgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
110 |
Q |
| |
|
|||||||||||||||||| ||| | |||| ||||||| || || |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
2893105 |
tgttgagagaaaacaaaagcaattttgacctagtaatcagcaatgttcatatgccagacatggacggatttaagcttcttgagcttgttggacttgagat |
2893204 |
T |
|
| Q |
111 |
ggacctacctgtcataagtaagttatgcaatt-ctacaacattatgtttactgatacatttataacaaattatgaaatgttttaattacaaagt-tttgt |
208 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || | || |||| | | ||||||| ||||| |||||| | | |||| |||| ||||| |||| |
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| T |
2893205 |
ggacctacctgtcatcagtaagttatgcaattccttcgaccttat-atcatcgatacatgtataaggaattat--agtattttgattataaagtgtttga |
2893301 |
T |
|
| Q |
209 |
tttcagtgttttctgaaaatgatgatcctaagctggtgatgaaagcaattgatcttggtgcttgt |
273 |
Q |
| |
|
||||||||||||||| ||||||||||| ||| |||||||||||| |||||| | ||||||||| |
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| T |
2893302 |
tttcagtgttttctgcgaatgatgatccgaagatggtgatgaaaggaattgaacacggtgcttgt |
2893366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 11 - 133
Target Start/End: Complemental strand, 49061287 - 49061165
Alignment:
| Q |
11 |
tgttgagagaaaacaaaaacaaatatgacttagtaatgagtaacgttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagat |
110 |
Q |
| |
|
||||||||||||||||| |||| | |||| | ||||| ||| | || || ||||| |||||||||||||||||||| ||||| ||||| |||||||| || |
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| T |
49061287 |
tgttgagagaaaacaaagacaagtttgacctggtaatcagtgatgtacacatgccggacatggatggatttaagctgcttgaacttgtgggacttgaaat |
49061188 |
T |
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| Q |
111 |
ggacctacctgtcataagtaagt |
133 |
Q |
| |
|
|||||| || ||||||||||||| |
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| T |
49061187 |
ggaccttcccgtcataagtaagt |
49061165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 55 - 134
Target Start/End: Complemental strand, 47281117 - 47281038
Alignment:
| Q |
55 |
gttcatatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaagtt |
134 |
Q |
| |
|
||||| ||||| |||||||||||| | ||||| || || ||||| |||||||| ||||| || ||||||||||||||||| |
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|
| T |
47281117 |
gttcacatgcctgacatggatggactcaagctgctggaacttgtaggacttgaaatggatcttcctgtcataagtaagtt |
47281038 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 38953391 - 38953318
Alignment:
| Q |
61 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaagtt |
134 |
Q |
| |
|
||||| |||||||| || || || |||||||||| |||||||||||||||||| || |||||||| ||| |||| |
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|
| T |
38953391 |
atgcctgacatggacggtttcaaacttcttgagcatgttggacttgagatggatcttcctgtcattagtcagtt |
38953318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 134
Target Start/End: Original strand, 22085264 - 22085338
Alignment:
| Q |
60 |
tatgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaagtt |
134 |
Q |
| |
|
|||||| |||||||||||||||||| | |||||| | || |||||||| |||||| |||||||||| |||||||| |
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|
| T |
22085264 |
tatgcccgacatggatggatttaagttgcttgagttggtaggacttgaaatggacttacctgtcatcagtaagtt |
22085338 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 54895106 - 54895035
Alignment:
| Q |
61 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaag |
132 |
Q |
| |
|
|||||||| |||||||| || ||||| ||||||| |||||||||||||||||||| ||| |||| |||||| |
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|
| T |
54895106 |
atgccagaaatggatggtttcaagctccttgagcaagttggacttgagatggacctgcctttcattagtaag |
54895035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 54889483 - 54889412
Alignment:
| Q |
61 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaag |
132 |
Q |
| |
|
|||||||| ||||||||||| ||||| ||||||| ||||||||||| || |||||||| |||| |||||| |
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|
| T |
54889483 |
atgccagaaatggatggattcaagctccttgagcaagttggacttgaaatagacctacccttcatcagtaag |
54889412 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 61 - 132
Target Start/End: Complemental strand, 54905532 - 54905461
Alignment:
| Q |
61 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagtaag |
132 |
Q |
| |
|
||||||||||||||||| || ||||| ||||||| ||||||||||| ||||| ||||| |||| |||||| |
|
|
| T |
54905532 |
atgccagacatggatggcttcaagctccttgagcaagttggacttgaaatggatttacctttcatcagtaag |
54905461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 130
Target Start/End: Original strand, 34316049 - 34316118
Alignment:
| Q |
61 |
atgccagacatggatggatttaagcttcttgagcttgttggacttgagatggacctacctgtcataagta |
130 |
Q |
| |
|
||||| ||||||||||| || || |||||||| | |||||||||||||||||| || |||||||| |||| |
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|
| T |
34316049 |
atgcctgacatggatggtttcaaacttcttgaacatgttggacttgagatggatcttcctgtcattagta |
34316118 |
T |
|
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