View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_31 (Length: 287)
Name: NF11095_low_31
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_31 |
 | |
|
| [»] scaffold0230 (1 HSPs) |
| | |
|
| [»] scaffold0511 (2 HSPs) |
| | |
|
| [»] scaffold0144 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0230 (Bit Score: 178; Significance: 5e-96; HSPs: 1)
Name: scaffold0230
Description:
Target: scaffold0230; HSP #1
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 35 - 276
Target Start/End: Original strand, 2478 - 2719
Alignment:
| Q |
35 |
ataagcattgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttgaagagaagtcatgg |
134 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
2478 |
ataagcaatgtatgcaagtttatgaggttttgaaagctatttggtagcgactttgcatttgtacacgaaatgatttctactctttgaagagaagtcatgg |
2577 |
T |
|
| Q |
135 |
ctcccaatgattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatttggctgtttccatagaa |
234 |
Q |
| |
|
||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | | |
|
|
| T |
2578 |
ctcccaatgattccggcaagtgattaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatccggctgtttccactgta |
2677 |
T |
|
| Q |
235 |
gtatgaaatcgccacttgacgaagggaagttaatttgttcat |
276 |
Q |
| |
|
| | ||||| ||||||||||||||||||||| ||||||||| |
|
|
| T |
2678 |
gcacgaaattaccacttgacgaagggaagttagtttgttcat |
2719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 22 - 276
Target Start/End: Complemental strand, 18808558 - 18808304
Alignment:
| Q |
22 |
aggacatccagcaataagcattgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttga |
121 |
Q |
| |
|
||||||| || ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||| |
|
|
| T |
18808558 |
aggacattcaacaatagacaatgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatttgtacacgaaatgatttctactctttga |
18808459 |
T |
|
| Q |
122 |
agagaagtcatggctcccaatgattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatttggc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
18808458 |
agagaagtcatggctcccaatgattccggcaagtgattaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaatatccggc |
18808359 |
T |
|
| Q |
222 |
tgtttccatagaagtatgaaatcgccacttgacgaagggaagttaatttgttcat |
276 |
Q |
| |
|
|||||||| | || | ||||| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
18808358 |
tgtttccactgcagcacgaaattgccgcttgacgaagggaagttagtttgttcat |
18808304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 34 - 276
Target Start/End: Complemental strand, 18875546 - 18875304
Alignment:
| Q |
34 |
aataagcattgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttgaagagaagtcatg |
133 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||| |||||||||||||||| || || ||| |||||||||||| ||||||||||||||||||| |
|
|
| T |
18875546 |
aataagcaacgtatgcaagtttatgaggttttgaaagctgtttggtagcgactttaaatttggacaaaaaatgatttctactctttgaagagaagtcatg |
18875447 |
T |
|
| Q |
134 |
gctcccaatgattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatttggctgtttccataga |
233 |
Q |
| |
|
|||||||| ||||| ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| ||| || || ||||| || | |
|
|
| T |
18875446 |
gctcccaacgattcaggcaagtaatcaaagaatgatagagtcaaattttgaagggaggggataacttctaagccctctaatatccggttgtttgcaaggt |
18875347 |
T |
|
| Q |
234 |
agtatgaaatcgccacttgacgaagggaagttaatttgttcat |
276 |
Q |
| |
|
|| ||||| |||||||||||||||||||||| ||||||||| |
|
|
| T |
18875346 |
agcccgaaattgccacttgacgaagggaagttagtttgttcat |
18875304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 16836585 - 16836621
Alignment:
| Q |
105 |
tgatttctaatctttgaagagaagtcatggctcccaa |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16836585 |
tgatttctaatgtttgaagagaagtcatggctcccaa |
16836621 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 105 - 141
Target Start/End: Original strand, 16841696 - 16841732
Alignment:
| Q |
105 |
tgatttctaatctttgaagagaagtcatggctcccaa |
141 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
16841696 |
tgatttctaatgtttgaagagaagtcatggctcccaa |
16841732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: scaffold0511
Description:
Target: scaffold0511; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 43 - 276
Target Start/End: Original strand, 7173 - 7406
Alignment:
| Q |
43 |
tgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttgaagagaagtcatggctcccaat |
142 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7173 |
tgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatttgtacacgaaatgatttctactctttgaagagaagtcatggctcccaac |
7272 |
T |
|
| Q |
143 |
gattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaacatttggctgtttccatagaagtatgaaa |
242 |
Q |
| |
|
||||| ||||||||||||||| ||||||||| |||||||||||| |||||||||||||||||||||||||| || ||||||||||| | || | |||| |
|
|
| T |
7273 |
gattcaggcaagtaatcaaagaatgatagagccaaattttgtagcgaggggataacttctaagccctgtaatatccggctgtttccactgcagcacgaaa |
7372 |
T |
|
| Q |
243 |
tcgccacttgacgaagggaagttaatttgttcat |
276 |
Q |
| |
|
| ||| |||||||||||||||||| ||||||||| |
|
|
| T |
7373 |
ttgccgcttgacgaagggaagttagtttgttcat |
7406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0511; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 25 - 213
Target Start/End: Complemental strand, 3533 - 3345
Alignment:
| Q |
25 |
acatccagcaataagcattgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttgaaga |
124 |
Q |
| |
|
||||||| ||||||||| |||||||||||||||||| ||||||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||| |
|
|
| T |
3533 |
acatccaacaataagcaatgtatgcaagtttatgagattttgaaagctatttggtagcgactttgcatttgtacacgaaatgatttctactctttgaaga |
3434 |
T |
|
| Q |
125 |
gaagtcatggctcccaatgattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaa |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3433 |
gaagtcatggctcccaatgattccggcaagtgatcacagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaa |
3345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0144 (Bit Score: 124; Significance: 8e-64; HSPs: 1)
Name: scaffold0144
Description:
Target: scaffold0144; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 26 - 213
Target Start/End: Complemental strand, 4170 - 3983
Alignment:
| Q |
26 |
catccagcaataagcattgtatgcaagtttatgaggttttgaaagctatttggtagcgactttacatctgtacacgaaatgatttctaatctttgaagag |
125 |
Q |
| |
|
|||||| ||||||||| ||||||||||||| ||||||| ||||||||||||||||||||| |||||| || ||| |||| |||||||||||||||||||| |
|
|
| T |
4170 |
catccaacaataagcaatgtatgcaagtttgtgaggttctgaaagctatttggtagcgacattacatttgcacatgaaaagatttctaatctttgaagag |
4071 |
T |
|
| Q |
126 |
aagtcatggctcccaatgattccggcaagtaatcaaagtatgatagagtcaaattttgtagggaggggataacttctaagccctgtaa |
213 |
Q |
| |
|
|||||||||||||||||||||| |||| ||||| ||||| || |||| ||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4070 |
aagtcatggctcccaatgattctggcaggtaatgaaagtgtgctagactcaaattttgtagggaggggatatcttctaagccctgtaa |
3983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 105 - 154
Target Start/End: Original strand, 38943017 - 38943066
Alignment:
| Q |
105 |
tgatttctaatctttgaagagaagtcatggctcccaatgattccggcaag |
154 |
Q |
| |
|
|||||| |||||||||||||||||||||||| ||||| | ||||||||| |
|
|
| T |
38943017 |
tgatttgtaatctttgaagagaagtcatggcacccaaccagtccggcaag |
38943066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 104 - 141
Target Start/End: Original strand, 20152926 - 20152963
Alignment:
| Q |
104 |
atgatttctaatctttgaagagaagtcatggctcccaa |
141 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
20152926 |
atgatttctaatttttgaagagaagtcatggcacccaa |
20152963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University