View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_32 (Length: 282)
Name: NF11095_low_32
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_32 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 19 - 272
Target Start/End: Complemental strand, 8931011 - 8930758
Alignment:
| Q |
19 |
gaaataggtagtggagataaaagtgaagatggattgcgaagggtgcgaaagaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaa |
118 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8931011 |
gaaataggtagtggagataaaagtgaagatggattgcgaagggtgtgaaagaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaa |
8930912 |
T |
|
| Q |
119 |
gtggaaccaaaacaaagcaagctcactgtaaccggctacgtagagccaaacaaagtgttggagcgggtgaagcaccatacaggaaagaaagccgagtttt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8930911 |
gtggaaccaaaacaaagcaagctcactgtaaccggctacgtagagccaaacaaagtgttggagcgggtgaagcaccatacaggaaagaaagccgagtttt |
8930812 |
T |
|
| Q |
219 |
ggccttatgttccctacgatgttgttccgaccccttatgcaccggaggcctatg |
272 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8930811 |
ggccttatgttccctacgatgttgttccgaccccttatgcaccggaggcctatg |
8930758 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 36 - 120
Target Start/End: Original strand, 27630924 - 27631008
Alignment:
| Q |
36 |
taaaagtgaagatggattgcgaagggtgcgaaagaagggtgaagaaatcagtggaaggcatgaagggagtgacaaaagtggaagt |
120 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| |
|
|
| T |
27630924 |
taaaagtgaagatggattgcgaaggatgcgaaagaaaagtgaagaaatcagtggaagggatgaaaggagtgacacaagtggaagt |
27631008 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University