View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_33 (Length: 275)
Name: NF11095_low_33
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_33 |
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Alignment Details
Target: chr8 (Bit Score: 261; Significance: 1e-145; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 265
Target Start/End: Complemental strand, 34731670 - 34731406
Alignment:
| Q |
1 |
tcccagtgggactgggagcaccaatcattcttcaatgcaaaagcaactgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaa |
100 |
Q |
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| T |
34731670 |
tcccagtgggactgggagcaccaatcattcttcaatgcaaaagcaactgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaa |
34731571 |
T |
|
| Q |
101 |
tcaatgtcgggttgttcgataaacccggtggaagtggtatttttggctctgcatcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaa |
200 |
Q |
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| T |
34731570 |
tcaatgtcgggttgttcgatacacccggtggaagtggtatttttggctctgcatcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaa |
34731471 |
T |
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| Q |
201 |
taatagcaaaacatgtatatttgcttgtggaaattctcatacaccagagctttcttctgtctctg |
265 |
Q |
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| T |
34731470 |
taatagcaaaacatgtatatttgcttgtggaaattctcatacaccagagctttcttctgtctctg |
34731406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 152 - 265
Target Start/End: Complemental strand, 38611779 - 38611666
Alignment:
| Q |
152 |
catcaaggagttcaaaatcagcttcaaatagttcatcgttaaataggaataatagcaaaacatgtatatttgcttgtggaaattctcatacaccagagct |
251 |
Q |
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| T |
38611779 |
catcaaggagttctaaatcagattcaaacagttcatcatcaattagggatattagcaaaacatttatatttgcttttgaaagttctcatgcgccagagct |
38611680 |
T |
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| Q |
252 |
ttcttctgtctctg |
265 |
Q |
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| T |
38611679 |
ttcttctgtctctg |
38611666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 4 - 151
Target Start/End: Complemental strand, 34727432 - 34727285
Alignment:
| Q |
4 |
cagtgggactgggagcaccaatcattcttcaatgcaaaagcaactgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaatca |
103 |
Q |
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|||||||| ||||| |||| | |||| || || |||||||||||||| | | ||||||||||||||||| ||||| ||| |||| |||| |||||||| |
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| T |
34727432 |
cagtgggaatgggatcacctaccattactcgatacaaaagcaactgaaaaccaaaaattacaaccaccaaactggactatggaacttgacccagaaatca |
34727333 |
T |
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| Q |
104 |
atgtcgggttgttcgataaacccggtggaagtggtatttttggctctg |
151 |
Q |
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| T |
34727332 |
atttcgggttgtatgatacgcccgttggaagtggttcttctggctctg |
34727285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 121
Target Start/End: Complemental strand, 34722357 - 34722274
Alignment:
| Q |
38 |
caaaagcaactgaatatccaaaattacaaccaccaagctggagtatcgaacaagaccgagaaatcaatgtcgggttgttcgata |
121 |
Q |
| |
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||||||| |||||| || ||||||||||||||||| |||||||||| || ||||||||||| |||||| |||||||||||| |
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| T |
34722357 |
caaaagctactgaaaataaaaaattacaaccaccaaactggagtatcaaattagaccgagaaaataatgtctggttgttcgata |
34722274 |
T |
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