View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_35 (Length: 263)
Name: NF11095_low_35
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_35 |
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Alignment Details
Target: chr8 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 245
Target Start/End: Original strand, 34731661 - 34731916
Alignment:
| Q |
1 |
cccactgggaagagggagatattgcattcaagtccatcagaaaagcttagaaattaggtaatctaatctgcaaagtataaaccaaatgagattatcaatg |
100 |
Q |
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| T |
34731661 |
cccactgggaagagggagatattgcattcaagtccatcagaaaagcttagaaattaggtaatctaatctgcaaagtataaaccaaatgagattatcaatg |
34731760 |
T |
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| Q |
101 |
ctaatgttgttgcttttctagaaacaaggaaaagtataacaaggttttatagacattttaacaagtcagaaatgagtatgcgttt-----------acaa |
189 |
Q |
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| T |
34731761 |
ctaatgttgttgcttttctagaaacaaggaaaagtataacaaggttttatagacattttaacaagtcagaaatgagtatgcgtttgttttgcggtaacaa |
34731860 |
T |
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| Q |
190 |
aaattgattctttgaaattgattatagctaagaatgagtcaagttgaaagtgattt |
245 |
Q |
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| T |
34731861 |
aaattgattctttgaaattgattatagctaagaatgagttaagttgaaagtgattt |
34731916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 34727426 - 34727597
Alignment:
| Q |
1 |
cccactgggaagagggagatattgcattcaagtccatcagaa-----aagcttagaaattaggtaatctaatctgcaaagtataaaccaaatgagattat |
95 |
Q |
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| T |
34727426 |
cccactgtgaagagggagatattgcattcaagtccatcagaaaagaaaagcttagaaattaggtaatctaatctgcaaagtataagccaaatgagattat |
34727525 |
T |
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| Q |
96 |
caatgctaatgttgttgcttttctagaaacaaggaaaagtataacaaggttttatagacattttaacaagtca |
168 |
Q |
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| T |
34727526 |
caatg-taatgttgtagtatttctagaaacaaggaaaagtataacaaggttttatagacattttaacaagtca |
34727597 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 1 - 164
Target Start/End: Original strand, 34722385 - 34722548
Alignment:
| Q |
1 |
cccactgggaagagggagatattgcattcaagtccatcagaaaagcttagaaattaggtaatctaatctgcaaagtataaaccaaatgagattatcaatg |
100 |
Q |
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||||||| |||||||||||| |||||||||| ||||||||||||||| |||| ||||| ||||||||||||||||| ||| ||||||||||| || |
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| T |
34722385 |
cccactgtgaagagggagattttgcattcaaatccatcagaaaagctcagaagttagggaatctaatctgcaaagttaaaatcaaatgagattgctgata |
34722484 |
T |
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| Q |
101 |
ctaatgttgttgcttttctagaaacaaggaaaagtataacaaggttttatagacattttaacaa |
164 |
Q |
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| T |
34722485 |
ctagttttgttgcttttctagaaacaaggaaaattataacaaggttttatagacattttaacaa |
34722548 |
T |
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