View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_41 (Length: 239)
Name: NF11095_low_41
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_41 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 190; Significance: 1e-103; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 17 - 239
Target Start/End: Complemental strand, 9748243 - 9748021
Alignment:
| Q |
17 |
actaacttcaacagttcctttccttgaggcggcgacaacatggaagagttgcatagnnnnnnnctgaatctagaaagtgtcaaaggtggtccaagaataa |
116 |
Q |
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| T |
9748243 |
actaacttcaacagttcctttccttgaggcggcgacaacatggaagagttgcatagtttttttctgaatctagaaagtgtcaaaggtggtccaagaacaa |
9748144 |
T |
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| Q |
117 |
ctgaaagtgattcatttaacaaatcaagcaaaatcttgtggtctagattgttctcactttgatccttcgtagaattttcgttattctccttgatcaattt |
216 |
Q |
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| T |
9748143 |
ctgaaagtgattcatttaacaaatcaagcaaaatcttgtggtctagtttgttctcactttgatccttcatagaattttcgttattctccttgatcaattt |
9748044 |
T |
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| Q |
217 |
tttatgagattcttccacttctt |
239 |
Q |
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| T |
9748043 |
tttatgagattcttccacttctt |
9748021 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 115 - 239
Target Start/End: Original strand, 10297513 - 10297637
Alignment:
| Q |
115 |
aactgaaagtgattcatttaacaaatcaagcaaaatcttgtggtctagattgttctcactttgatccttcgtagaattttcgttattctccttgatcaat |
214 |
Q |
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||||||||||||||||||| |||||||||||||||| |||| |||||| ||||||||| ||||||||||| |||||||||| | ||||| |||||||||| |
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| T |
10297513 |
aactgaaagtgattcatttgacaaatcaagcaaaatattgttgtctagtttgttctcagtttgatccttcatagaattttcttcattctgcttgatcaat |
10297612 |
T |
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| Q |
215 |
tttttatgagattcttccacttctt |
239 |
Q |
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| T |
10297613 |
ttcttatgagattcttccacttctt |
10297637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 81 - 239
Target Start/End: Original strand, 10289317 - 10289461
Alignment:
| Q |
81 |
tgaatctagaaagtgtcaaaggtggtccaagaataactgaaagtgattcatttaacaaatcaagcaaaatcttgtggtctagattgttctcactttgatc |
180 |
Q |
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| T |
10289317 |
tgaatctagacaatgtcaacggtggtccaagaacgactgaaagtgattcatttaacaa-----------tcttgtggtctagtttgttctcactttgatc |
10289405 |
T |
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| Q |
181 |
cttcgtagaattttcgttattctccttgatcaattttttatgagattcttccacttctt |
239 |
Q |
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|||| |||||||||| |||||| ||||||||| |||||||||||||||||||||| |
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| T |
10289406 |
cttcatagaattttcaccattctc---gatcaatttcttatgagattcttccacttctt |
10289461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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