View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11095_low_5 (Length: 749)

Name: NF11095_low_5
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11095_low_5
NF11095_low_5
[»] chr8 (6 HSPs)
chr8 (497-731)||(15169316-15169550)
chr8 (174-501)||(15169680-15170007)
chr8 (7-145)||(15170007-15170142)
chr8 (393-503)||(15169600-15169715)
chr8 (662-727)||(15172141-15172206)
chr8 (306-365)||(32109599-32109658)
[»] chr6 (2 HSPs)
chr6 (276-365)||(12026559-12026646)
chr6 (276-365)||(12033479-12033566)
[»] scaffold0591 (1 HSPs)
scaffold0591 (267-360)||(2131-2224)
[»] chr5 (4 HSPs)
chr5 (268-365)||(22693154-22693251)
chr5 (293-364)||(33469296-33469367)
chr5 (279-365)||(34307091-34307175)
chr5 (293-365)||(26604743-26604815)
[»] chr4 (1 HSPs)
chr4 (276-365)||(12587101-12587189)
[»] chr3 (2 HSPs)
chr3 (274-365)||(3163285-3163376)
chr3 (328-363)||(29635568-29635603)
[»] chr2 (3 HSPs)
chr2 (276-348)||(37058380-37058452)
chr2 (293-365)||(39091972-39092044)
chr2 (318-365)||(20530413-20530460)
[»] chr7 (2 HSPs)
chr7 (275-363)||(28008230-28008318)
chr7 (270-365)||(1321942-1322036)
[»] scaffold0294 (1 HSPs)
scaffold0294 (328-365)||(512-549)


Alignment Details
Target: chr8 (Bit Score: 227; Significance: 1e-125; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 497 - 731
Target Start/End: Complemental strand, 15169550 - 15169316
Alignment:
Q  497 acatacagattccattactccaaaaacagtaattttcttctacagatcatgttatcaagttgtttactttaccgcaaaccacttatatactgttcctata 596  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15169550 acatacagattccattactccaaaaacagtaattttcttctacatatcatgttatcaagttgtttactttaccgcaaaccacttatatactgttcctata 15169451  T
Q  597 aataatagcttgtggaagaacaaaatattcatcacactagtgactatcaaaatcagttatccttcaatgaattctacacatttaattgaagagcaatcaa 696  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  15169450 aataatagcttgtggaagaacaaaatattcatcacactagtgactatcaaaatcagttctccttcaatgaattctacacatttaattgaagagcaatcaa 15169351  T
Q  697 aggatggacaagaagaaaaccaacaagacaataag 731  Q
    |||||||||||||||||||||||||||||||||||    
T  15169350 aggatggacaagaagaaaaccaacaagacaataag 15169316  T

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Target: chr8; HSP #2
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 174 - 501
Target Start/End: Complemental strand, 15170007 - 15169680
Alignment:
Q  174 cagttaacggctgctccgtacccaacggcagttaatttttgttgtcctagcg-cagttaattgttgttacgttcttttcaagcataactagcaactcatt 272  Q
    |||||||| ||||||  ||| ||||||||| |||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15170007 cagttaactgctgctttgtatccaacggcaattaattttggttgtcctagcggcagttaattgttgttacgttcttttcaagcataactagcaactcatt 15169908  T
Q  273 ttttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataacagtgtttg 372  Q
    |||||||||||||||||||      | |||| ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15169907 ttttccatttcacaaaact------cgaaaaccctctcaaatcatccaacactatatttcttcaaattcaaatcagtcaccactccaataacagtgtttg 15169814  T
Q  373 attcattcagatgaagattaggttgtattattatgttgtgtc-----gaggacatacatattatgacaaacaaagaaactatccaccaaagaaacatggg 467  Q
    ||||||||||||||||||||| ||||||||||||||||||||      ||||||||||||||||||||||||||||||||| |||||||| ||| |||||    
T  15169813 attcattcagatgaagattagattgtattattatgttgtgtcaattataggacatacatattatgacaaacaaagaaactaaccaccaaataaatatggg 15169714  T
Q  468 ttgtattattatgttgtgtcaatattaggacata 501  Q
    |||||||||||||||||||||||| |||||||||    
T  15169713 ttgtattattatgttgtgtcaataataggacata 15169680  T

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Target: chr8; HSP #3
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 7 - 145
Target Start/End: Complemental strand, 15170142 - 15170007
Alignment:
Q  7 ggagaagcaaaggcagaatcggagaaggagaaaatggagagtgggtggttccattgagatagagaagaggacatgtgtttgggttggattgtgnnnnnnn 106  Q
    |||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||           
T  15170142 ggagaagcaatggcagaatcggagatggagaaaatggagagtgggtggttccattgagatagagaagaggacatgtgtttgggttgaattgtgtttcttt 15170043  T
Q  107 nnactgttggtttggagtgtttgaaaatttctcttctcc 145  Q
      ||   ||||||||||||||||||||||||||||||||    
T  15170042 ttac---tggtttggagtgtttgaaaatttctcttctcc 15170007  T

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Target: chr8; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 393 - 503
Target Start/End: Complemental strand, 15169715 - 15169600
Alignment:
Q  393 ggttgtattattatgttgtgtcga-----ggacatacatattatgacaaacaaagaaactatccaccaaagaaacatgggttgtattattatgttgtgtc 487  Q
    |||||||||||||||||||||| |     ||||||| |||||||||||||||||||||||| |||||||| ||| ||| |||||||||||||||||||||    
T  15169715 ggttgtattattatgttgtgtcaataataggacatagatattatgacaaacaaagaaactaaccaccaaataaatatgagttgtattattatgttgtgtc 15169616  T
Q  488 aatattaggacataca 503  Q
    ||||||||||||||||    
T  15169615 aatattaggacataca 15169600  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 662 - 727
Target Start/End: Complemental strand, 15172206 - 15172141
Alignment:
Q  662 aatgaattctacacatttaattgaagagcaatcaaaggatggacaagaagaaaaccaacaagacaa 727  Q
    |||| |||||||||||||||| | |||||||||||||||||||||||||| || ||||||||||||    
T  15172206 aatggattctacacatttaatgggagagcaatcaaaggatggacaagaagcaagccaacaagacaa 15172141  T

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Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 306 - 365
Target Start/End: Complemental strand, 32109658 - 32109599
Alignment:
Q  306 ctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||| |||||||||||||||| ||||||||||| ||||||||| ||  ||||||||||||    
T  32109658 ctctcaaatcatccaacaccaaatttcttcaaactcaaatcaggcaaaactccaataaca 32109599  T

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Target: chr6 (Bit Score: 51; Significance: 8e-20; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 12026559 - 12026646
Alignment:
Q  276 tccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||||||||||||| |||||||||||  ||||  ||||||||||||||| || |||||||||||| ||||||||||||| ||||||||    
T  12026559 tccatttcacaaaactcaatctctaaaactctct--aatcatccaacaccaaatatcttcaaattcatatcagtcaccacttcaataaca 12026646  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 12033479 - 12033566
Alignment:
Q  276 tccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||||||||||||| |||||||||||  ||||  ||||||||||||||| || |||||||||||| ||||||||||||| ||||||||    
T  12033479 tccatttcacaaaactcaatctctaaaactctct--aatcatccaacaccaaatatcttcaaattcatatcagtcaccacttcaataaca 12033566  T

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Target: scaffold0591 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 267 - 360
Target Start/End: Original strand, 2131 - 2224
Alignment:
Q  267 ctcattttttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaa 360  Q
    ||||||||||||||||||||||||| |||||||||||  || | |||||||| |||| |||||||||| |||||||||||| |  |||||||||    
T  2131 ctcattttttccatttcacaaaactcaatctctaaaactctttcaaatcatctaacatcatatttctttaaattcaaatcatttgccactccaa 2224  T

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Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 268 - 365
Target Start/End: Complemental strand, 22693251 - 22693154
Alignment:
Q  268 tcattttttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||| |||||||||||||| |  |||||||||||  |||| |||||||||||||||| |||||||||||||| |||||| |||||| | |||||||    
T  22693251 tcatttcttccatttcacaaatcccaatctctaaaactctctcaaatcatccaacaccaaatttcttcaaattctaatcagccaccaccctaataaca 22693154  T

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Target: chr5; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 293 - 364
Target Start/End: Complemental strand, 33469367 - 33469296
Alignment:
Q  293 aatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataac 364  Q
    |||||||||||  |||| |||||||||||||||| ||||| ||||||||||||||| ||||||| |||||||    
T  33469367 aatctctaaaactctctcaaatcatccaacaccaaatttcgtcaaattcaaatcagccaccactacaataac 33469296  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 279 - 365
Target Start/End: Complemental strand, 34307175 - 34307091
Alignment:
Q  279 atttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||| ||||| || |||||||||||  |||  |||||||| ||||||| ||||||||||||||||||||| ||||||| ||||||||    
T  34307175 attttacaaatctcaatctctaaaagactc--aaatcatctaacaccaaatttcttcaaattcaaatcagccaccacttcaataaca 34307091  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 26604815 - 26604743
Alignment:
Q  293 aatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||||||||  |||| |||||||||||||||| ||||  | ||||||||||||| || |||| ||||||||    
T  26604815 aatctctaaaattctctcaaatcatccaacaccaaattttataaaattcaaatcagccatcactacaataaca 26604743  T

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Target: chr4 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 12587101 - 12587189
Alignment:
Q  276 tccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||||| ||||||| |||||||||| |  ||| ||| |||||||||||||||||||||||||||||||||| ||||||| ||||||||    
T  12587101 tccatttcccaaaactcaatctctaaacaa-tctcaaaacatccaacaccatatttcttcaaattcaaatcagacaccacttcaataaca 12587189  T

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Target: chr3 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 274 - 365
Target Start/End: Complemental strand, 3163376 - 3163285
Alignment:
Q  274 tttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    ||||||||| ||||| || |||||||||||  |||| | |||||||||||||| |||||||||||||||||||| ||||||||  |||||||    
T  3163376 tttccattttacaaatctcaatctctaaaactctctcatatcatccaacaccacatttcttcaaattcaaatcaatcaccactttaataaca 3163285  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 328 - 363
Target Start/End: Complemental strand, 29635603 - 29635568
Alignment:
Q  328 atttcttcaaattcaaatcagtcaccactccaataa 363  Q
    |||||||||||||||||||||||| |||||||||||    
T  29635603 atttcttcaaattcaaatcagtcaacactccaataa 29635568  T

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Target: chr2 (Bit Score: 45; Significance: 3e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 276 - 348
Target Start/End: Original strand, 37058380 - 37058452
Alignment:
Q  276 tccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcag 348  Q
    ||||||||||||||||  ||||||||||  |||| |||||||||||||||| || ||||||||||||||||||    
T  37058380 tccatttcacaaaactcgatctctaaaactctctcaaatcatccaacaccaaatctcttcaaattcaaatcag 37058452  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 293 - 365
Target Start/End: Complemental strand, 39092044 - 39091972
Alignment:
Q  293 aatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||||||||||| |||| |||||| | |||| || |||| |||||||||||||||| ||||||||||||||||    
T  39092044 aatctctaaaaatctctcaaatcaacaaacatcaaattttttcaaattcaaatcagacaccactccaataaca 39091972  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 318 - 365
Target Start/End: Complemental strand, 20530460 - 20530413
Alignment:
Q  318 ccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    ||||||||| ||||| ||||||||||||||| ||||||| ||||||||    
T  20530460 ccaacaccaaatttcatcaaattcaaatcagccaccactacaataaca 20530413  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 275 - 363
Target Start/End: Original strand, 28008230 - 28008318
Alignment:
Q  275 ttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataa 363  Q
    ||||||||||||| | | |||||||||||  |||| |||||||||||||||| ||||  || |||||||||||| ||||||| ||||||    
T  28008230 ttccatttcacaacattcaatctctaaaattctctcaaatcatccaacaccaaattttgtcgaattcaaatcagccaccactacaataa 28008318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 270 - 365
Target Start/End: Complemental strand, 1322036 - 1321942
Alignment:
Q  270 attttttccatttcacaaaactgaatctctaaaaacctcttaaatcatccaacaccatatttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    |||| |||||||||||| |||| ||||||||||  | ||| ||||||||||||| || |||||||||| ||||||| || ||||||| ||||||||    
T  1322036 atttcttccatttcacataactcaatctctaaactc-tctcaaatcatccaacatcaaatttcttcaagttcaaataagccaccactacaataaca 1321942  T

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Target: scaffold0294 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0294
Description:

Target: scaffold0294; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 328 - 365
Target Start/End: Original strand, 512 - 549
Alignment:
Q  328 atttcttcaaattcaaatcagtcaccactccaataaca 365  Q
    ||||||||||||||||||| ||||||||||||||||||    
T  512 atttcttcaaattcaaatcggtcaccactccaataaca 549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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