View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11095_low_6 (Length: 603)
Name: NF11095_low_6
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_6 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 563; Significance: 0; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 563; E-Value: 0
Query Start/End: Original strand, 18 - 592
Target Start/End: Complemental strand, 17109469 - 17108895
Alignment:
| Q |
18 |
gaaattaatacacttataaacatctagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgaccaatttt |
117 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
17109469 |
gaaattaatacacttataaacatcaagagtgtcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagccaccactgatgaccaatttt |
17109370 |
T |
|
| Q |
118 |
acaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcc |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109369 |
acaaggaaattgtagtgaccagctagtggaatttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcc |
17109270 |
T |
|
| Q |
218 |
cgatcaaatgcacggaggatcctcccacgcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgat |
317 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109269 |
cgatcaaatgcacggaggatcctcccaagcaacatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgat |
17109170 |
T |
|
| Q |
318 |
tagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtgactttggc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109169 |
tagacgtaattcactgattttcggagaagatggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtgactttggc |
17109070 |
T |
|
| Q |
418 |
attttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatctttccatc |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17109069 |
attttgcctttcagacttggacatcgcactatataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatctttccatc |
17108970 |
T |
|
| Q |
518 |
catccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctat |
592 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17108969 |
catccatatccttaaaaattaaagtttccaaggatggaaatggaacagatggagaagagcagctcacatccctat |
17108895 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 49 - 592
Target Start/End: Complemental strand, 16978106 - 16977566
Alignment:
| Q |
49 |
tcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgaccaattttacaaggaaattgtagtgaccagctagtggaa |
148 |
Q |
| |
|
|||||||| |||||||| || || ||||| || ||||||||||| ||||||| ||||| ||||||||||||||||| ||||| || ||| |||| |
|
|
| T |
16978106 |
tcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtccaattttacaaggaaactgtagcatccgcataggggaa |
16978007 |
T |
|
| Q |
149 |
tttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcccgatcaaatgcacggaggatcctcccacgca |
248 |
Q |
| |
|
| |||| |||||| || ||||||||||||||| ||||||||||||||||||||||||||| | | |||| || ||| ||||||||||||| | | | | |
|
|
| T |
16978006 |
tatgcatagttgggcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcccggtccaatccacggaggatccttcgatgta |
16977907 |
T |
|
| Q |
249 |
acatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaagat |
348 |
Q |
| |
|
|||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| |||||| | ||||||| |||||||||| ||||| || |
|
|
| T |
16977906 |
acattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaat |
16977807 |
T |
|
| Q |
349 |
ggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcacta |
448 |
Q |
| |
|
||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| || |
|
|
| T |
16977806 |
ggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcatta |
16977707 |
T |
|
| Q |
449 |
tataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaa |
548 |
Q |
| |
|
|| |||||||| ||| |||||||| ||| || || ||||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
16977706 |
tagaaagcttttttagacgtggaaaaacaacc---cccccaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaa |
16977610 |
T |
|
| Q |
549 |
ggatggaaatggaacagatggagaagagcagctcacatccctat |
592 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||| ||||||||| |
|
|
| T |
16977609 |
ggatggaaatggaatagatacagtagagcttctcccatccctat |
16977566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 49 - 567
Target Start/End: Complemental strand, 17048316 - 17047801
Alignment:
| Q |
49 |
tcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgaccaattttacaaggaaattgtagtgaccagctagtggaa |
148 |
Q |
| |
|
|||||||| |||||||| || || ||||| || ||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||| |||| |
|
|
| T |
17048316 |
tcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtccaattttacaaggaaattgtagcatccgcataggggaa |
17048217 |
T |
|
| Q |
149 |
tttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcccgatcaaatgcacggaggatcctcccacgca |
248 |
Q |
| |
|
| |||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||| | | || |||| ||| ||||||||||||| | | | | |
|
|
| T |
17048216 |
tatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcctgatccaatccacggaggatccttcgatgta |
17048117 |
T |
|
| Q |
249 |
acatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaagat |
348 |
Q |
| |
|
||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| |||||| | ||||||| |||||||||| ||||| || |
|
|
| T |
17048116 |
gcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaat |
17048017 |
T |
|
| Q |
349 |
ggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcacta |
448 |
Q |
| |
|
||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| || |
|
|
| T |
17048016 |
ggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcatta |
17047917 |
T |
|
| Q |
449 |
tataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaa |
548 |
Q |
| |
|
|| |||||||| ||| |||||||| ||| || ||| |||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
17047916 |
tagaaagcttttttagacgtggaaaaacaacc---cccttaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaa |
17047820 |
T |
|
| Q |
549 |
ggatggaaatggaacagat |
567 |
Q |
| |
|
|||||||||||||| |||| |
|
|
| T |
17047819 |
ggatggaaatggaatagat |
17047801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 49 - 592
Target Start/End: Complemental strand, 17029978 - 17029438
Alignment:
| Q |
49 |
tcaagattcgggaacagtttgagagggaaggtcgttagagagtcacagctaccactgatgaccaattttacaaggaaattgtagtgaccagctagtggaa |
148 |
Q |
| |
|
|||||||| |||||||| || || ||||| || ||||||||||| ||||||| ||||| ||||||||||||||||||||||| || ||| |||| |
|
|
| T |
17029978 |
tcaagatttgggaacagattcagcgggaatgttgttagagagtcgcagctactggtgatgtccaattttacaaggaaattgtagcatccgcataggggaa |
17029879 |
T |
|
| Q |
149 |
tttgcacagttggacagtcttcaattttcaacactttaatgttggtaccacattcagataaggcactcccgatcaaatgcacggaggatcctcccacgca |
248 |
Q |
| |
|
| |||| ||||| || ||||||||||||||| ||||||||||||||||||||||||||| | | || |||| ||| ||||||||||||| | | | | |
|
|
| T |
17029878 |
tatgcatagttgcgcaatcttcaattttcaacgatttaatgttggtaccacattcagataatgtatgcctgatccaatccacggaggatccttcgatgta |
17029779 |
T |
|
| Q |
249 |
acatccacggatctcaagaaacttcagagagggtgaacaataattaaattccaattctccgcaattgattagacgtaattcactgattttcggagaagat |
348 |
Q |
| |
|
||| ||| || | |||||| ||||||| || | || ||||||||||| ||||| ||| |||||| | ||||||| |||||||||| ||||| || |
|
|
| T |
17029778 |
gcattgacgaatgtaaagaaatttcagagtggataaatgataattaaatttcaattttccacaattggtgagacgtagttcactgattgatggagagaat |
17029679 |
T |
|
| Q |
349 |
ggaacagaatcaacaagttgtttacagtcacagattttcaaattcactaaacattcaagtgactttggcattttgcctttcagacttggacatcgcacta |
448 |
Q |
| |
|
||||||||| || || ||||| || ||||| ||||||| | |||||||||||||||||| || ||| | |||| |||||||| |||||||||||| || |
|
|
| T |
17029678 |
ggaacagaagtcacgagctgtttgcaatcacaaattttcagactcactaaacattcaagtgtctctggtaatttgtctttcagatttggacatcgcatta |
17029579 |
T |
|
| Q |
449 |
tataaagctttcgtaggcgtggaaatacaccctcaacctcaacagcttcagattcccaatctttccatccatccatatccttaaaaattaaagtttccaa |
548 |
Q |
| |
|
|| |||||||| ||| |||||||| ||| || || |||| ||||| ||||||| | || |||||||| ||||||||||||| |||| |||||||| |
|
|
| T |
17029578 |
tagaaagcttttttagacgtggaaaaacaacc---ccccnaacaacttcaaattcccatttttcccatccattcatatccttaaaagttaaggtttccaa |
17029482 |
T |
|
| Q |
549 |
ggatggaaatggaacagatggagaagagcagctcacatccctat |
592 |
Q |
| |
|
|||||||||||||| |||| || ||||| ||| ||||||||| |
|
|
| T |
17029481 |
ggatggaaatggaatagatacagtagagcttctcccatccctat |
17029438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 34; Significance: 0.0000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 500 - 565
Target Start/End: Complemental strand, 14298044 - 14297979
Alignment:
| Q |
500 |
attcccaatctttccatccatccatatccttaaaaattaaagtttccaaggatggaaatggaacag |
565 |
Q |
| |
|
||||||| |||| |||| ||| |||||||| ||| ||||||||||||||||||||||||||||| |
|
|
| T |
14298044 |
attcccattcttcccattcatacatatcctcaaattgtaaagtttccaaggatggaaatggaacag |
14297979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University