View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11095_low_8 (Length: 535)
Name: NF11095_low_8
Description: NF11095
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11095_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 520
Target Start/End: Original strand, 2572181 - 2572683
Alignment:
| Q |
18 |
atggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtacacgtcaagttaccc |
117 |
Q |
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| T |
2572181 |
atggctattgttcatttcttcgtgattaatatataagtataccatctccatgactcatttactatgactttaattgttatatgtacacgtcaagttaccc |
2572280 |
T |
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| Q |
118 |
cccattccatattttataatctttctcatacacattcactactttgtacattcctatcctatttgaggtaatggtagttaggcatagttaggcaactgcc |
217 |
Q |
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| T |
2572281 |
cccattccatattttataatctttctcatacacatgcactactttgtacattcctatcctatttgaggtaatggtagttaggcatagttaggcaactgcc |
2572380 |
T |
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| Q |
218 |
atattttttcctactataaataccagaaagtttcgttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagtttgttgatcaatag |
317 |
Q |
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| T |
2572381 |
atattttttcctactataaataccagaaagtttagttgaatatcatgcagacttagaaacttaatagaaccatcatgaggtgcagtttgttgatcaatag |
2572480 |
T |
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| Q |
318 |
tttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaattcattagtacaaattcctcggctaattacgactatgca |
417 |
Q |
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| T |
2572481 |
tttgatcttgttatttgtcatgggtagttggaatggattattagccataacggatgatgaattcattagtacaaattcctcggctaattacgactatgca |
2572580 |
T |
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| Q |
418 |
gatgctcttggcaaagccatcatgttttttgaaggacaacgctcaggaaagttgcctaaggaccaaagagtgaagtggaggggagactcggctctctctg |
517 |
Q |
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| T |
2572581 |
gatgctcttggcaaagccatcttgttttttgaaggacaacgctcaggaaagttgcctaaggaccaaagagtgaagtggaggggagactcggctctctctg |
2572680 |
T |
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| Q |
518 |
atg |
520 |
Q |
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| T |
2572681 |
atg |
2572683 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 287 - 520
Target Start/End: Original strand, 2561919 - 2562155
Alignment:
| Q |
287 |
ccatcatgaggtgcagtttgttgatcaatagtttgatcttgttatttgtcatgggtagttggaat---ggattattagccataacggatgatgaattcat |
383 |
Q |
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|||||||| |||||||||||||||| | | |||| ||||||| |||| |||| ||||| |||| || ||||||| |||| |||||| ||||| || |
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| T |
2561919 |
ccatcatggggtgcagtttgttgataagtggtttaatcttgtggtttgccatgagtagtaagaataatggtatattagcaataatggatgaggaattaat |
2562018 |
T |
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| Q |
384 |
tagtacaaattcctcggctaattacgactatgcagatgctcttggcaaagccatcatgttttttgaaggacaacgctcaggaaagttgcctaaggaccaa |
483 |
Q |
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| T |
2562019 |
tagtaaaagttcctcatcaagttacaactatgcagatgctcttggcaaagcaatcttgttttttgaaggacaacgctcagggaaattgcctaaagaccaa |
2562118 |
T |
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| Q |
484 |
agagtgaagtggaggggagactcggctctctctgatg |
520 |
Q |
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| T |
2562119 |
agagtgaagtggaggggagattcagcactctctgatg |
2562155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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