View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_high_2 (Length: 633)
Name: NF11096_high_2
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 524; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 18 - 622
Target Start/End: Complemental strand, 1426143 - 1425539
Alignment:
| Q |
18 |
atcatattataccaaaagttgtatggtttaaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1426143 |
atcatattataccaaaagttgtatggtttaaatattttgggtttataaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatg |
1426044 |
T |
|
| Q |
118 |
ggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnnnnnatcgaacatcaataaagctgatgat |
217 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
1426043 |
ggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcacgttgaaagaatttttttatcgaacatcaataaagctgatgat |
1425944 |
T |
|
| Q |
218 |
gtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattagagc |
317 |
Q |
| |
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|||||||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||| ||| |||||||||||||||||| ||||||||||||| |
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| T |
1425943 |
gtttggtggtaaacaaccagcaaaaacataaattaagcatagtagatatgaggacgttgtgttggatgtatagtaagattagacggaatagaattagagc |
1425844 |
T |
|
| Q |
318 |
taacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttcta |
417 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| | |
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| T |
1425843 |
taacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttcca |
1425744 |
T |
|
| Q |
418 |
tcaagttacataatgatgataatacacattggtgatattcatacttacagaagactcattcattgaatttatcatctcacactacataactagatatcat |
517 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| || |||||||| |||||||||||||||||| |
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| T |
1425743 |
tcaagttacataatgatgataatacacattggtgatattcatacttacaaaagacttattcattgaattcattatctcacattacataactagatatcat |
1425644 |
T |
|
| Q |
518 |
gcaacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtcta |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425643 |
gcaacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtcta |
1425544 |
T |
|
| Q |
618 |
ttctt |
622 |
Q |
| |
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||||| |
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| T |
1425543 |
ttctt |
1425539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 18 - 604
Target Start/End: Complemental strand, 1448233 - 1447637
Alignment:
| Q |
18 |
atcatattataccaaaagttgtatggtttaaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatg |
117 |
Q |
| |
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||||||| ||| ||||||||| |||||||||||||||||||||||| ||||||||||||| ||||| ||||||||||||||||||||||| || ||| |
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| T |
1448233 |
atcatatcatatcaaaagttgcatggtttaaatattttgggtttatagtgaaaaacaacaaagaaataaaaggagatgtaaatcatcaaacct-tgcatg |
1448135 |
T |
|
| Q |
118 |
ggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttca--tgttgaaagaannnnnnnatcgaacatcaataaagctgatg |
215 |
Q |
| |
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|||||||||| | || |||||||||||||||||| |||||| ||||||||| ||| |||||||| || |||||||||||||||| |||||| |
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| T |
1448134 |
ggtggttgaaatggaggaatgcctcgtgtgttttatgtgatgcgaaagtactactcacgtgttgaaataaattttt-atcgaacatcaataaaactgatg |
1448036 |
T |
|
| Q |
216 |
atgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattaga |
315 |
Q |
| |
|
|||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||| ||| | |||||||| |||| |||||| ||||||| |
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|
| T |
1448035 |
atgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtgtagtaagactagaggggataaaattaga |
1447936 |
T |
|
| Q |
316 |
gctaacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttc |
415 |
Q |
| |
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|||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
1447935 |
gctaac-tgaacataaatttatgggacaatactacttaggtttacttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttc |
1447837 |
T |
|
| Q |
416 |
tatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatcatctcacactacataactagata |
513 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| | |||||||| |||||||||||||| |
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|
| T |
1447836 |
tatcaagttacataatgatgataatacacccattggtgatattcctacttacaaaagactcattcattgaattcagtatctcacattacataactagata |
1447737 |
T |
|
| Q |
514 |
tca--tgc-------aacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagttttcaaataccttaagcattggct |
604 |
Q |
| |
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||| | | |||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
1447736 |
tcaccttcatcagttaacaacttagctaattcttatccaaacccacaaatattcattgtagtactgcttgtagagttttcaaataccttaagcattggct |
1447637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 148; E-Value: 9e-78
Query Start/End: Original strand, 18 - 496
Target Start/End: Complemental strand, 1470717 - 1470229
Alignment:
| Q |
18 |
atcatattataccaaaagttgtatggtttaaatattttgggtttatgaagaaaaacaacaaataaatagaaggagatgtaaatcatcaaacccatggatg |
117 |
Q |
| |
|
||||||| ||||||||||||| |||||||||||||||| ||||||| |||||||||||||| |||||||||| |||||||||||||||||| | |||| |
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| T |
1470717 |
atcatatcataccaaaagttgcatggtttaaatatttttggtttatagtgaaaaacaacaaatgaatagaaggaaatgtaaatcatcaaaccc-tagatg |
1470619 |
T |
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| Q |
118 |
ggtggttgaactagacgaatgcctcgtgtgttttgtgtgattcgaaagtaccgttcatgttgaaagaannnnnnn----------atcgaacatcaataa |
207 |
Q |
| |
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|||||| ||| | || ||||| || |||| |||| |||||| | |||| ||| ||| ||||||||| ||||||||| | ||| |
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| T |
1470618 |
ggtggtagaaatggaggaatgtcttgtgtattttatgtgatgc-aaagcaccactcacattgaaagaatttttttttttttttttatcgaacattagtaa |
1470520 |
T |
|
| Q |
208 |
agctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggata |
307 |
Q |
| |
|
| | | ||||||||||||||| ||| || |||||||||||||||||||||||||| || |||||||||| | | | | ||||| ||||| |||| |
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| T |
1470519 |
aaccaacgatgtttggtggtaagcaaccaacacaaacataaattaagcatagtagagatacaaaagttgtgttgggtatgttgtaaggctagacatgata |
1470420 |
T |
|
| Q |
308 |
gaattagagctaacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttct |
407 |
Q |
| |
|
|||||||| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| |||||| ||| | ||||| | |
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|
| T |
1470419 |
gaattagacctaacatgaacataaatttatggggcaatactacttaggtttacttgatgactgaagattacttggatctaaacctaaatcaagaccttat |
1470320 |
T |
|
| Q |
408 |
aatacttctatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatcatctca |
496 |
Q |
| |
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|||||||| ||||||||| ||||||||||||||||| |||||||||||||| |||||||| ||||| | ||||||||||| || |||||| |
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| T |
1470319 |
aatacttccatcaagttatataatgatgataatacacccattggtgatattcctacttacaaaagaccccttcattgaattcattatctca |
1470229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 217 - 301
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
| Q |
217 |
tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac |
301 |
Q |
| |
|
||||||||||||| || || |||||| ||||||||||| ||| ||| ||||||| |||||||| ||| | | |||||| ||||| |
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| T |
52442909 |
tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac |
52442825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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