View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_high_4 (Length: 587)
Name: NF11096_high_4
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_high_4 |
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Alignment Details
Target: chr1 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 562
Target Start/End: Complemental strand, 37864944 - 37864383
Alignment:
| Q |
1 |
tagtctagatcggggccgtctccgagatttcgggtgccctgtgcgaatttgaatacattcccccnnnnnnnaactcataaatatattcaatatcagaaag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
37864944 |
tagtctagatcggggccgtctccgagatttcgggtgccctgtgcgaatttgaatacattccccctttttttaactcataaatatattcaatatcagaaag |
37864845 |
T |
|
| Q |
101 |
ttatgcatgcattaggaaaacaattaaatgttcgaacagaactcaatatcatcaaacttgattttgattcaattgttaaaatcactcaaatgacttttaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
37864844 |
ttatgcatgcattaggaaaacaattaaatgttcgaacagaactcaatatcatcaaacttgattttgattcaattgttaaaatcactctaatgacttttaa |
37864745 |
T |
|
| Q |
201 |
ttcttcaaattgaatttcaccttgaagatcatatgaattaccgtgttttaaataagtttcaagactaattcaagataa-tttaagtcctcatcagaaaat |
299 |
Q |
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||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
37864744 |
ttcttcaaattgaatttcaccatgaagatcatatgaattaccatgttttaaataagtttcaagactaattcaagataattttaagtcctcatcagaaaat |
37864645 |
T |
|
| Q |
300 |
gacccaagtctttcaatactaaacaaagactaatgcaagaattaccatgttttatattaattgtatgannnnnnnnattttactatatatacactacgaa |
399 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
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| T |
37864644 |
gacccaagtctttcaatactaaacaaagactaatgcaagaattaccatgttttatattaattgtatgattttttttattttactatatatacactatgaa |
37864545 |
T |
|
| Q |
400 |
gnnnnnnnntaatttggtgcccctaaaattttagtgccttgtgtggtcactcctctcgcacgccctattggtcgcccctggtctagattacaagcttacc |
499 |
Q |
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| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37864544 |
g-aaaaaaataatttggtgcccctaaaattttagtggcttgtgtggtcgctcctctcgcacgccctattggtcgcccctggtctagattacaagcttacc |
37864446 |
T |
|
| Q |
500 |
cctgaaccatactcgttgatttcaccccctcacctccaaccttcctctttataatccaacgtg |
562 |
Q |
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|
| T |
37864445 |
cctgaaccatactcgttgatttcgccccctcacctccaaccttcctctttataatccaacgtg |
37864383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 98 - 129
Target Start/End: Original strand, 45768910 - 45768941
Alignment:
| Q |
98 |
aagttatgcatgcattaggaaaacaattaaat |
129 |
Q |
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| T |
45768910 |
aagttatgcatgcattaggaaaacaattaaat |
45768941 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 104 - 264
Target Start/End: Complemental strand, 48229360 - 48229200
Alignment:
| Q |
104 |
tgcatgcattaggaaaacaattaaatgttcgaacagaactcaatatcatcaaacttgattttgattcaattgttaaaatcactcaaatgacttttaattc |
203 |
Q |
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||||||||||||||||| | |||| |||| | |||| |||||||||| ||||| ||||||||||| |||||||| ||| |||||||||||||| |
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| T |
48229360 |
tgcatgcattaggaaaatacttaattgtttttatagaattcaatatcatataactttattttgattcatctgttaaaacttctctaatgacttttaatta |
48229261 |
T |
|
| Q |
204 |
ttcaaattgaatttcaccttgaagatcatatgaattaccgtgttttaaataagtttcaaga |
264 |
Q |
| |
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||||||| ||||||||| | ||||||||| |||| | | ||||||| || ||||||||| |
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|
| T |
48229260 |
ttcaaatataatttcaccgtcaagatcataagaatcatcttgttttaggtatgtttcaaga |
48229200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 154 - 254
Target Start/End: Complemental strand, 15857456 - 15857356
Alignment:
| Q |
154 |
aaacttgattttgattcaattgttaaaatcactcaaatgacttttaattcttcaaattgaatttcaccttgaagatcatatgaattaccgtgttttaaat |
253 |
Q |
| |
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|||||||||||||||||||| |||||||| | |||||||||||||||||||| | |||||| ||| | ||||| ||| |||| | ||||||||||| |
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| T |
15857456 |
aaacttgattttgattcaatatttaaaatcttttgaatgacttttaattcttcaagtagaattttaccatcaagattataagaatcattgtgttttaaat |
15857357 |
T |
|
| Q |
254 |
a |
254 |
Q |
| |
|
| |
|
|
| T |
15857356 |
a |
15857356 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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