View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_high_6 (Length: 482)
Name: NF11096_high_6
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 18 - 472
Target Start/End: Original strand, 39346036 - 39346490
Alignment:
| Q |
18 |
caactcaatcaccaaaaggtgttggtgctgctcaattgaatagggtatcttctgttgcctcacatgaaagtgaattgccattggcaaaatcaatgagatc |
117 |
Q |
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| T |
39346036 |
caactcaatcaccaaaaggtgttggtgctgctcaattgaatagggtatcttctgttgcctcacatgaaagtgaattgccattggcaaaatcaatgagatc |
39346135 |
T |
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| Q |
118 |
gtgacatgacatgattttcgttgaaattttgttccttcttgttgatgctctcattttttggggtgccctatgtgatacataataatcatctaattaattg |
217 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346136 |
gtgacatgacatgattttcattgaaattttgttccttcttgttgatgctctcattttttggggtgccctatgtgatacataataatcatctaattaattg |
39346235 |
T |
|
| Q |
218 |
gtgatggctctaactcaaaatgcttgaactattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgtttaggtatacatgaat |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |
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| T |
39346236 |
gtgatggctctaactcaaaatgcttgaactattctataatcacatcatcaatgcatttgcacctcatgaatatataggccttgttgagggatacatgaat |
39346335 |
T |
|
| Q |
318 |
gctctacgtatattcaatgacatgataggccttgttctctaaaacttctcttctatataactctattaggagatatttcatacagacttgtataaagaaa |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39346336 |
gctctacgtatattcaatgacatgataggccttgttctctaaaacttcttttctatataactctattaggagatatttcatacagacttgtataaagaaa |
39346435 |
T |
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| Q |
418 |
tggtaatttgatgattcaagtctcactagttttttattttgtagttttcttcatc |
472 |
Q |
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|| |||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
39346436 |
tgataatttgatgattcaagtctcactagttttagattttgtagttttcttcatc |
39346490 |
T |
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