View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_high_7 (Length: 463)
Name: NF11096_high_7
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_high_7 |
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Alignment Details
Target: chr4 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 19 - 452
Target Start/End: Original strand, 55143951 - 55144384
Alignment:
| Q |
19 |
gctcaaatgtgaattactttttaactttctttaacattgttccttaatcatatgtgaagcacgatttcaaattctacctcccaacacctacatttgtata |
118 |
Q |
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| T |
55143951 |
gctcaaatgtgaattactttttaactttctttaacattgttccttaatcatatgtgaagcacgatttcaaattctacctcccaacacctacatttgtata |
55144050 |
T |
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| Q |
119 |
aatttgtatttcagttagattgtaaagtacccttcaatttttaggggtacccatgtttttacaaaattatatattacaatcaatattgagggatttgagt |
218 |
Q |
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| T |
55144051 |
aatttgtatttcagttagattgtaaagtacccttcaatttttaggggtacccatgtttttacaaaattatatattgcattcaatattgagggatttgagt |
55144150 |
T |
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| Q |
219 |
tatctctatttgaatcaatacatgtgttgtaacttgtcaggtatctttgaatataatttttgacaaaaggtatctttgatttaattggtggttttatgac |
318 |
Q |
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| T |
55144151 |
tatctctatttggatcaatacatgtgctgtaacttgtcaggtatctttgaatataatttttgacaaaaggtatctttgatttaattggtggttttatgac |
55144250 |
T |
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| Q |
319 |
tctcaaatgatattcgaagctggatgggaaccaaacaaccgtgaagcaagaaatatcgtttgacttgagaaacaaaagtgtccttcagttggttggctct |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55144251 |
tctcaaatgatattcgaagctggatgggaaccaaacaaccgtgaagcaagaaatatcgtttgacttgagaaacaaaagtgtccttcagttggttggctct |
55144350 |
T |
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| Q |
419 |
tatgcaaataaatgagaatcacatatattcctat |
452 |
Q |
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| T |
55144351 |
tatgcaaataaatgagaatcacatatattcctat |
55144384 |
T |
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