View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_low_11 (Length: 278)
Name: NF11096_low_11
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 252; Significance: 1e-140; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 260
Target Start/End: Complemental strand, 28531540 - 28531281
Alignment:
| Q |
1 |
accaaagagcaaagaggaaaggcttccatgtggggcgaattgaagaacaaagtagaggccacgatcaattccaaaaccgatgagacgtgttgcatttggg |
100 |
Q |
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| T |
28531540 |
accaaagagcaaagaggaaaggcttccatgtggggcgaattgaagaacaaagtagaggccacgatcaattccaaaaccgatgagacgcgttgcatttggg |
28531441 |
T |
|
| Q |
101 |
tggttaatgtgagcaataatcccaagctccgacaagaaatcaccagcagctctgtctccagcttccttctcattgttcattagcctctttactgctacaa |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28531440 |
tggttaatgtgagcaataatcccaagctccgacaagaaatcaccagcagctctgtctccagcttccttctcattgttcattagcctctttactgctacaa |
28531341 |
T |
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| Q |
201 |
ccgttccatcaggtaagcgtcctttgtacacttctgcatgaccaccttttccaatcatgt |
260 |
Q |
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| T |
28531340 |
ccattccatcaggtaagcgtcctttgtacacttctgcatgaccaccttttccaatcatgt |
28531281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 176 - 257
Target Start/End: Complemental strand, 13672770 - 13672689
Alignment:
| Q |
176 |
ttcattagcctctttactgctacaaccgttccatcaggtaagcgtcctttgtacacttctgcatgaccaccttttccaatca |
257 |
Q |
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| T |
13672770 |
ttcattagtctctttactgcgacaacttgaccatctgataagtgtcctttgtatacttcagcatgaccaccttttccaatca |
13672689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 257
Target Start/End: Original strand, 40114763 - 40114799
Alignment:
| Q |
221 |
cctttgtacacttctgcatgaccaccttttccaatca |
257 |
Q |
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| T |
40114763 |
cctttgtacacttcagcataaccaccttttccaatca |
40114799 |
T |
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