View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_low_12 (Length: 278)
Name: NF11096_low_12
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 164; Significance: 1e-87; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 164; E-Value: 1e-87
Query Start/End: Original strand, 44 - 262
Target Start/End: Original strand, 50613677 - 50613888
Alignment:
| Q |
44 |
gacacaaatgttgaggttctcttcattttctctttgaactagg----taggaatcaagagtgtattgtttttgtggtttcacgtgttttgtttattgcaa |
139 |
Q |
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| T |
50613677 |
gacacaaatgttgaggttctcttcattttctctttgaactaggtaggtaggaatcaagggtgtattgtttttgtggtttcacgtgttttgtttattgcaa |
50613776 |
T |
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| Q |
140 |
ttatcatcaatccttaaattaagctaagctgatcatgctcataaaataaagaaacggatactaatgtaactattagacaattatggctattttaatatgc |
239 |
Q |
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| T |
50613777 |
ttatcatcaatccttaaattaagc-----------tgctcataaaataaagaaacggatactaatgtaactattagacaattatggctattttaatatgc |
50613865 |
T |
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| Q |
240 |
tctcctcagttatggtaaatagt |
262 |
Q |
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||||||||||||||||||||||| |
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| T |
50613866 |
tctcctcagttatggtaaatagt |
50613888 |
T |
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