View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_low_13 (Length: 277)
Name: NF11096_low_13
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 242; Significance: 1e-134; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 12074912 - 12075182
Alignment:
| Q |
1 |
aatcacatgactcgatgtcgtgtcggcatcaaacattgacatgtgtcagaaacaagagacacatatctaaagtgt----cggtgctacaaaatgtatgtt |
96 |
Q |
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| T |
12074912 |
aatcacatgactcgatgtcgtgtcggcatcaaacattgacatgtgtcagaaacaagagacacaaatctaatgtgtacgtcggtgctacaaaatgtatgtt |
12075011 |
T |
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| Q |
97 |
acattgctcatacatgccaccaaattaacattatgtccatacatggtttggtaaagaaagttgaattgaaagttttggataagtaataagctttttcgtg |
196 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12075012 |
acattgctcatacatcccaccaaattaacattatgtccatacatggtttggtaaagaaagttgaattgaaagttttggataagtaataagctttttcgtg |
12075111 |
T |
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| Q |
197 |
tggtcacaaattaagctaagttcaccgtttcttcctccaaaactaatgtcgactcacaatttcaccctatg |
267 |
Q |
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| T |
12075112 |
tggtcacaaattaagctaagttcaccgtttcttcctccaaaactaatgtcgactcacaatttcaccctatg |
12075182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 155; E-Value: 2e-82
Query Start/End: Original strand, 1 - 267
Target Start/End: Original strand, 12076243 - 12076509
Alignment:
| Q |
1 |
aatcacatgactcgatgtcgtgtcggcatcaaacattgacatgtgtcagaaacaagagacacatatctaaagtgtcggtgctacaaaatgtatgttacat |
100 |
Q |
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| T |
12076243 |
aatcacatgactcagtgtcgtgtcggcatcacacattgacatgtgtcagataccagagacacagacctaatgtgtcaatgctaaaaaatgtaagttatat |
12076342 |
T |
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| Q |
101 |
tgctcatacatgccaccaaattaacattatgtccatacatggtttggtaaagaaagttgaattgaaagttttggataagtaataagctttttcgtgtggt |
200 |
Q |
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| T |
12076343 |
tgctcatacatgtcaccaaattaacatcatgtccataaatggttttgtatagaaagttgaaccgaaagttttcgataagtaatcagcttcttcgtgtggc |
12076442 |
T |
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| Q |
201 |
cacaaattaagctaagttcaccgtttcttcctccaaaactaatgtcgactcacaatttcaccctatg |
267 |
Q |
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| T |
12076443 |
cacaaattaagctaagttcaccgttctttcctccaaaactaatgtcgactcaaagtttcaccctatg |
12076509 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 12054378 - 12054620
Alignment:
| Q |
1 |
aatcacatgactcgatgtcgtgtcggcatcaaacattgacatgtgtcagaaacaagagacacatatctaaagtgtcggtgctacaaaatgtatgttacat |
100 |
Q |
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| T |
12054378 |
aatcacacgactctatattgtgtcggcatcaat-attgacatgtgtcagatacctgagacatagatctaaagtgtcgatgctacaaaatgtatgctacat |
12054476 |
T |
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| Q |
101 |
tgctcatacatgccaccaaattaacattat----gtccatacatggtttggtaaagaaagttgaattgaaagttttggataagtaataagctttttcgtg |
196 |
Q |
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| T |
12054477 |
tgctcatacatgtcaccaaattaacattatttatgtccatacatgattttgtatagaaagttgaatcgaaagttttcgataagtaatcagcttcttcgtg |
12054576 |
T |
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| Q |
197 |
tggtcacaaattaagctaagttcaccgtttcttcctccaaaacta |
241 |
Q |
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| T |
12054577 |
tggtcacaaatcaagctaagttcaccgttt-ttcttccaaaacta |
12054620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 94 - 233
Target Start/End: Original strand, 12060134 - 12060273
Alignment:
| Q |
94 |
gttacattgctcatacatgccaccaaattaacattatgtccatacatggtttggtaaagaaagttgaattgaaagttttggataagtaataagctttttc |
193 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||| ||| | || || | |||||||||| ||||| || |
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| T |
12060134 |
gttacattgctcatacatgtcaccaaattaacattatgtccatacatggttttgtatagaaagtttaataggaacttgttgataagtaatcagcttcttg |
12060233 |
T |
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| Q |
194 |
gtgtggtcacaaattaagctaagttcaccgtttcttcctc |
233 |
Q |
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| T |
12060234 |
gccttgtcactaatcaagctgagttcaccgtatcttcctc |
12060273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 12065182 - 12065244
Alignment:
| Q |
76 |
cggtgctacaaaatgtatgttacattgctcatacatgccaccaaattaacattatgtccataca |
139 |
Q |
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| T |
12065182 |
cggtgctacaaaatgtatgttacattgctcatacatgtcaccaaattaaca-tatgtccataca |
12065244 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 139
Target Start/End: Original strand, 12052391 - 12052453
Alignment:
| Q |
76 |
cggtgctacaaaatgtatgttacattgctcatacatgccaccaaattaacattatgtccataca |
139 |
Q |
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| T |
12052391 |
cggtgctacaaaatgtatgttacattgctcatacatgtcaccaaattagca-tatgtccataca |
12052453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 69 - 110
Target Start/End: Original strand, 12059723 - 12059764
Alignment:
| Q |
69 |
aaagtgtcggtgctacaaaatgtatgttacattgctcataca |
110 |
Q |
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| T |
12059723 |
aaagtgtcggtgctacaaaacgtatgttgcattgctcataca |
12059764 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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