View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_low_3 (Length: 613)
Name: NF11096_low_3
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_3 |
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| [»] scaffold0003 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 456; Significance: 0; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 18 - 583
Target Start/End: Original strand, 12074324 - 12074889
Alignment:
| Q |
18 |
agatggtaagtgaattactaacaattggaatttgacagagatgtctgttggttattcctgtcctaatgacactgttcatgggccacatcgctgaaactac |
117 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| | |||||||||| |
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| T |
12074324 |
agatggtaagtgaattactaacaattgcaatttgacagagatgtcttttggttattcctgtcctaatgacactgttcaagggccacaccactgaaactac |
12074423 |
T |
|
| Q |
118 |
taacttctccgacttatcatttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaattttattttaga |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
12074424 |
taacttctccgacttatcatttgattggtagtggagttccagtggtgagtttc-ttgagtagtagcattcacagtttaaaaagttcaattttattttaga |
12074522 |
T |
|
| Q |
218 |
aatcacaactttgatcccnnnnnnnnn-ctcttcactttcgttgttgattcagctcaaactaatgtcgtttcattgagttgcaactctacatggatttga |
316 |
Q |
| |
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|||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |
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| T |
12074523 |
aatcacaactttgatcccttttttctctctcttcattttctttgttgattcagctcaaactaatgtcgtttcattgagttgcaattctacatggatttta |
12074622 |
T |
|
| Q |
317 |
gaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttcat |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
12074623 |
gaaattcatttcatcatttgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttctt |
12074722 |
T |
|
| Q |
417 |
ctttacctccaattggtttttggtaggtgtctagaggatttagtagtactcacgcagttatcgaacatgacactgacacgtggttattgataggtgtcta |
516 |
Q |
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| T |
12074723 |
ctttaccttcaattggtttttggtaggtgtctagaggacttagtagtactcacgcagttatcgaacacgacactgacacgtggttattgataggtgtcta |
12074822 |
T |
|
| Q |
517 |
gaggactatgtagtactcatgcagttatcgaatacgacactgacacgtcaacatcaataataatttg |
583 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
12074823 |
gaggattatgtagtactcatgcagttatcgaatacgacactgatacgtcaacatcaataataatttg |
12074889 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 28 - 494
Target Start/End: Original strand, 12075739 - 12076197
Alignment:
| Q |
28 |
tgaattactaacaattggaatttgacagagatgtctgttggttattcctgtcctaatgacactgttcatgggccacatcgctgaaactactaacttctcc |
127 |
Q |
| |
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||||| ||||||||||| |||||||||||||||||| |||||||||||||||| |||||||||||||| | |||||| |||||||| ||| |||||||| |
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| T |
12075739 |
tgaatgactaacaattgcaatttgacagagatgtctattggttattcctgtcccaatgacactgttcaagtgccacaccgctgaaattaccaacttctct |
12075838 |
T |
|
| Q |
128 |
gacttatcatttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaattttattttagaaatcacaact |
227 |
Q |
| |
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|||||||||||||||||||| || |||||| | |||| |||||| |||||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
12075839 |
gacttatcatttgattggtaatgtagttccggaggtgttggtgcttgagcagtagcattgacagtttaaaaagttcaatttt-ttttagacgtcacaact |
12075937 |
T |
|
| Q |
228 |
ttgatcccnnnnnnnnnctcttcactttcgttgttgattcagctcaaactaatgtcgtttcattgagttgcaactctac---atggatttgagaaattca |
324 |
Q |
| |
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|||||||| ||||||| |||| | ||||||||| ||||||| ||||||||||||||||| ||||| ||||| ||||||||||||||| | |
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| T |
12075938 |
ttgatccc--tttttttctcttcattttcttcgttgattcaactcaaacgaatgtcgtttcattgagctgcaa-tctactttttggatttgagaaattaa |
12076034 |
T |
|
| Q |
325 |
tttcatcatttgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttcatctttacct |
424 |
Q |
| |
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|||||||||||||||||| |||||| |||||||||| |||||||||||||||||||||||||| ||||| |||| |||||| ||||||||| || |
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| T |
12076035 |
tttcatcatttgcaaaccctaatgg-------tttagacatatttaaaggtctgaactatgcaaactcttatcgtagtttttgattgctcatctttaact |
12076127 |
T |
|
| Q |
425 |
ccaattggtttttggtaggtgtctagaggatttagtagtactcacgcagttatcgaacatgacactgaca |
494 |
Q |
| |
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||||||||||||||||||||||||||| | | ||||||||||||||| ||||||||| ||||||||| |
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| T |
12076128 |
tcaattggtttttggtaggtgtctagagaactatgtagtactcacgcagatatcgaacacaacactgaca |
12076197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 25 - 497
Target Start/End: Original strand, 12053865 - 12054330
Alignment:
| Q |
25 |
aagtgaattactaacaattggaatttgacagagatgtctgttggttattcctgtcctaatgacactgttcatgggccacatcgctgaaactactaacttc |
124 |
Q |
| |
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|||||||| |||||||| || |||||| | ||||||||| |||||||||||||||| ||||||||||||| | |||||| | | |||||| | ||||| |
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| T |
12053865 |
aagtgaatgactaacaaatgcaatttggctgagatgtctattggttattcctgtcccaatgacactgttctagtgccacacccccgaaactgccaacttt |
12053964 |
T |
|
| Q |
125 |
tccgacttatcatttgattggtagtggagttccagtggtgagttcccttgagtagtagcattgacagtttaaaaagttcaattttatttt-agaaatcac |
223 |
Q |
| |
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||| |||| || |||||| ||||||| ||||| | |||| || | || ||||||||||||||| ||||||||||||||||| |||| ||||||||| |
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| T |
12053965 |
tccaacttgtcgtttgatcggtagtgtagttctgggggtgctatc--tggaatagtagcattgacaggttaaaaagttcaattttttttttagaaatcac |
12054062 |
T |
|
| Q |
224 |
aactttgatcccnnnnnnnnnctcttcactttcgttgttgattcagctcaaactaatgtcgtttcattgagttgcaactctacat---ggatttgagaaa |
320 |
Q |
| |
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|||||||||||| ||||||| |||| | ||||||||||||||||||||||||||||||||||| ||| ||||||| | ||||||||||| |
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| T |
12054063 |
aactttgatcccttttttt--ctcttcattttcttcgttgattcagctcaaactaatgtcgtttcattgagctgctactctacttcttggatttgagaat |
12054160 |
T |
|
| Q |
321 |
ttcatttcatcatttgcaaaccataatggtttagactttagacatacttaaaggtctgaactatgcaaactctaatcgtggtttctgattgttcatcttt |
420 |
Q |
| |
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|| ||||||||||||||||||| |||||||||| |||||||||||||||| ||||||||| |||| ||||||| |||| ||||||||||||||| |
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| T |
12054161 |
ttaatttcatcatttgcaaaccctaatggttta-------gacatacttaaaggtccgaactatgccaactataatcgtagtttttgattgttcatcttt |
12054253 |
T |
|
| Q |
421 |
acctccaattggtttttggtaggtgtctagaggatttagtagtactcacgcagttatcgaacatgacactgacacgt |
497 |
Q |
| |
|
| || ||||||||||||| ||||||||||||||||| |||||||||||||| ||||| |||| ||||||||||||| |
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| T |
12054254 |
aacttcaattggtttttgataggtgtctagaggattatgtagtactcacgcaattatcaaacacgacactgacacgt |
12054330 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 72 - 235
Target Start/End: Original strand, 12062654 - 12062818
Alignment:
| Q |
72 |
ttcctgtcctaatgacactgttcatgggccacatcgctgaaactactaacttctccgacttatcatttgattggtagtggagttcca-gtggtga-gttc |
169 |
Q |
| |
|
||||||||| |||||||||||||| | |||||| |||||||||||| |||||||| ||||||||||||| || ||| |||| || ||||||| | | |
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| T |
12062654 |
ttcctgtcccaatgacactgttcaagtgccacaccgctgaaactaccaacttctctaccttatcatttgatccgttgtgtagtttcaagtggtgatggtg |
12062753 |
T |
|
| Q |
170 |
ccttgagtagtagcattgacagtttaaaaagttcaattttattttagaaatcacaactttgatccc |
235 |
Q |
| |
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|| || |||||||||||||||||||||| |||||||||| |||| |||||||||||||||||||| |
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| T |
12062754 |
tct-gaatagtagcattgacagtttaaaatgttcaattttttttttgaaatcacaactttgatccc |
12062818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 497 - 583
Target Start/End: Original strand, 12054263 - 12054349
Alignment:
| Q |
497 |
tggttattgataggtgtctagaggactatgtagtactcatgcagttatcgaatacgacactgacacgtcaacatcaataataatttg |
583 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||||||| ||| ||||| || |||||||||||||||||||| || |||||||||| |
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| T |
12054263 |
tggtttttgataggtgtctagaggattatgtagtactcacgcaattatcaaacacgacactgacacgtcaacagcagtaataatttg |
12054349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 497 - 583
Target Start/End: Original strand, 12076133 - 12076219
Alignment:
| Q |
497 |
tggttattgataggtgtctagaggactatgtagtactcatgcagttatcgaatacgacactgacacgtcaacatcaataataatttg |
583 |
Q |
| |
|
||||| ||| ||||||||||||| ||||||||||||||| |||| ||||||| || ||||||||| || ||||||||||| |||||| |
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| T |
12076133 |
tggtttttggtaggtgtctagagaactatgtagtactcacgcagatatcgaacacaacactgacaagtaaacatcaataacaatttg |
12076219 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 12059454 - 12059502
Alignment:
| Q |
308 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
356 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||| |||| |
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| T |
12059454 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12059502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 308 - 356
Target Start/End: Original strand, 12064824 - 12064872
Alignment:
| Q |
308 |
tggatttgagaaattcatttcatcatttgcaaaccataatggtttagac |
356 |
Q |
| |
|
||||||| ||||||||||| |||||||||||||| |||||||| |||| |
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| T |
12064824 |
tggattttagaaattcattccatcatttgcaaacactaatggttcagac |
12064872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 20951 - 20994
Alignment:
| Q |
191 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
234 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
20951 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
20994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 191 - 234
Target Start/End: Original strand, 16430969 - 16431012
Alignment:
| Q |
191 |
gtttaaaaagttcaattttattttagaaatcacaactttgatcc |
234 |
Q |
| |
|
|||||||||||||||| || |||||||||||||||||||||||| |
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|
| T |
16430969 |
gtttaaaaagttcaatctttttttagaaatcacaactttgatcc |
16431012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 581
Target Start/End: Original strand, 26495518 - 26495551
Alignment:
| Q |
548 |
atacgacactgacacgtcaacatcaataataatt |
581 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||| |
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| T |
26495518 |
atacgacactgacacgtcaacatcaacaataatt |
26495551 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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