View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11096_low_5 (Length: 544)
Name: NF11096_low_5
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_5 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 18 - 540
Target Start/End: Complemental strand, 48167340 - 48166818
Alignment:
| Q |
18 |
tgatcaagggtagtgaagagtagagagcattactcaagagatgttgagcaagatttccattggcacagaactcatagacaagatatctttcgccatcttc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
48167340 |
tgatcaagggtagtgaagagtagagagcattactcaagagatgttgagcaagatttccattggcacagaactcgtagacaagatatctttcgccatcttc |
48167241 |
T |
|
| Q |
118 |
catgcaacagccaaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactcttt |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48167240 |
catgcaacagccaaacaagcaaacaaggtttggatgacgaagtctagaaagaccagcaagttctcgagtgaaagaatcagaactagaggtgttactcttt |
48167141 |
T |
|
| Q |
218 |
gtcaaatgcttgatggccacaacttgaccacttggcaaaacacctctaaacacttcacctgcactcccgcgtccaaggtttatcttttcattttcaaaat |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48167140 |
gtcaaatgcttgatggccacaacttgaccacttggcaaaacacctctaaacacttcacccgcactcccgcgtccaaggtttatcttttcattttcaaaat |
48167041 |
T |
|
| Q |
318 |
tcatggcattttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttga |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48167040 |
tcatggcattttcaatttcagtttttgtgaaccagtaaagtccagaccaagtagctatctgtttcaactggacgtgcttcttaacaggcttcttctttga |
48166941 |
T |
|
| Q |
418 |
tacacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaa |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48166940 |
tacacattttaccagaaaagcaataatcaataatgctaagatagctatcaccaacattgccaacacaagtttcttcattgatgattctaggttcacaaaa |
48166841 |
T |
|
| Q |
518 |
cgaaatgatgtccatctcattgt |
540 |
Q |
| |
|
| |||| ||||| || ||||||| |
|
|
| T |
48166840 |
caaaattatgtcaatttcattgt |
48166818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University