View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11096_low_8 (Length: 391)
Name: NF11096_low_8
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11096_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 17 - 380
Target Start/End: Complemental strand, 4162466 - 4162094
Alignment:
| Q |
17 |
acctgaatgacctttttgtttgaatcagtttacaaattagaaattcgaacataa---gtcacaactgatgcaagcgaaaggttcgattatatgtgacagc |
113 |
Q |
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| T |
4162466 |
acctaaatgacctttttgtttgaatcagtttataaat-agaaattcgaacctaattagtcacaactgatgcaagcgaaaggtccgattatatgtgacagc |
4162368 |
T |
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| Q |
114 |
ttgttata---------gccttttatatgattacatctgttggcaaatcaatttcccattttgctttgtagttagcaaaagcaaataatactactaaata |
204 |
Q |
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| T |
4162367 |
ttgttatatgctgtatagccttttatgt--ttgcatctgttggcaaatcaatttcccattttgctttgtagttagcaaaagcaaataatactactaaata |
4162270 |
T |
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| Q |
205 |
gtctctctttttgttttaagtaaaaatgagggcacatagggaaagaagctataatatagccttttcagttatgatcatccttagtattcactcttacgac |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4162269 |
gtctctctttttgttttaagtaaaaatgagggcacatagggaaagaagctataatatagccttttcagttatgatcatccttagtattcactcttacgac |
4162170 |
T |
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| Q |
305 |
cctcctttttggtattgccgtgttaaccttgctttataagctttaattaatctacatgatattcatggacattctt |
380 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4162169 |
cctcttttttggtattgccgtgttaaccttgctttataagctttaattaatctacatgatattcatggacattctt |
4162094 |
T |
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