View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11096_low_9 (Length: 349)

Name: NF11096_low_9
Description: NF11096
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11096_low_9
NF11096_low_9
[»] chr3 (17 HSPs)
chr3 (142-349)||(40496772-40496979)
chr3 (143-349)||(41346047-41346253)
chr3 (143-349)||(51545662-51545868)
chr3 (143-337)||(54014237-54014431)
chr3 (142-340)||(50676474-50676671)
chr3 (143-340)||(48169724-48169921)
chr3 (152-349)||(24709019-24709216)
chr3 (7-146)||(43817319-43817458)
chr3 (178-340)||(48737561-48737723)
chr3 (143-282)||(12568169-12568308)
chr3 (143-282)||(13544633-13544772)
chr3 (278-349)||(13542886-13542957)
chr3 (143-250)||(30459806-30459913)
chr3 (24-59)||(43817592-43817627)
chr3 (140-168)||(38492049-38492077)
chr3 (140-168)||(41346322-41346350)
chr3 (139-175)||(50676741-50676777)
[»] chr4 (25 HSPs)
chr4 (140-349)||(40071543-40071752)
chr4 (143-349)||(925230-925436)
chr4 (143-349)||(54438251-54438457)
chr4 (143-349)||(17493753-17493959)
chr4 (143-340)||(20789673-20789870)
chr4 (146-349)||(37064847-37065050)
chr4 (143-349)||(34408751-34408957)
chr4 (143-349)||(39787992-39788199)
chr4 (150-349)||(47199493-47199692)
chr4 (143-340)||(32218040-32218237)
chr4 (141-340)||(21240324-21240523)
chr4 (171-346)||(53509739-53509914)
chr4 (196-340)||(52101101-52101245)
chr4 (172-349)||(33800877-33801053)
chr4 (143-270)||(51744657-51744784)
chr4 (178-346)||(28910255-28910421)
chr4 (150-340)||(46870614-46870802)
chr4 (178-335)||(3172129-3172284)
chr4 (138-314)||(41555457-41555633)
chr4 (143-234)||(10441143-10441235)
chr4 (303-340)||(51744622-51744659)
chr4 (148-234)||(28690104-28690189)
chr4 (142-175)||(20789940-20789973)
chr4 (143-175)||(34408657-34408689)
chr4 (143-175)||(47199754-47199786)
[»] chr7 (16 HSPs)
chr7 (143-349)||(29737405-29737611)
chr7 (143-349)||(4040947-4041153)
chr7 (143-349)||(40232209-40232415)
chr7 (143-340)||(6392271-6392468)
chr7 (143-340)||(27596189-27596385)
chr7 (143-340)||(41427751-41427948)
chr7 (145-340)||(25943750-25943943)
chr7 (142-349)||(31689447-31689654)
chr7 (143-326)||(24300261-24300444)
chr7 (143-340)||(38276648-38276845)
chr7 (143-340)||(21442903-21443098)
chr7 (178-346)||(48838095-48838261)
chr7 (143-250)||(22337710-22337818)
chr7 (142-250)||(22619523-22619631)
chr7 (143-175)||(25943649-25943681)
chr7 (143-175)||(40232115-40232147)
[»] chr2 (19 HSPs)
chr2 (143-349)||(43370674-43370880)
chr2 (143-337)||(45080524-45080718)
chr2 (143-349)||(2110220-2110426)
chr2 (143-349)||(29193988-29194194)
chr2 (145-349)||(28585777-28585981)
chr2 (143-349)||(4828183-4828389)
chr2 (143-346)||(1779169-1779372)
chr2 (170-349)||(8381410-8381589)
chr2 (143-346)||(42847006-42847207)
chr2 (178-335)||(39646437-39646591)
chr2 (255-346)||(9370486-9370577)
chr2 (143-250)||(25898463-25898570)
chr2 (226-340)||(43377311-43377423)
chr2 (143-250)||(31922032-31922139)
chr2 (179-264)||(16964852-16964937)
chr2 (142-175)||(8381315-8381348)
chr2 (138-175)||(31921616-31921653)
chr2 (140-175)||(45080417-45080452)
chr2 (143-175)||(29194256-29194288)
[»] chr8 (14 HSPs)
chr8 (140-349)||(27820770-27820979)
chr8 (143-349)||(11254500-11254706)
chr8 (143-349)||(38069989-38070195)
chr8 (143-340)||(17493526-17493723)
chr8 (140-337)||(39906908-39907102)
chr8 (143-349)||(18575028-18575234)
chr8 (143-345)||(17336068-17336270)
chr8 (146-340)||(12738469-12738663)
chr8 (143-335)||(9753770-9753960)
chr8 (178-335)||(13243656-13243811)
chr8 (143-250)||(11146770-11146877)
chr8 (143-175)||(11254768-11254800)
chr8 (143-175)||(17493794-17493826)
chr8 (143-175)||(18575296-18575328)
[»] chr5 (9 HSPs)
chr5 (143-349)||(36982186-36982392)
chr5 (143-340)||(14044056-14044253)
chr5 (177-349)||(42897468-42897640)
chr5 (143-335)||(2970775-2970964)
chr5 (143-250)||(33403194-33403301)
chr5 (142-250)||(36768782-36768890)
chr5 (143-175)||(14044323-14044355)
chr5 (143-175)||(36982454-36982486)
chr5 (143-175)||(42897374-42897406)
[»] chr1 (13 HSPs)
chr1 (143-349)||(32045833-32046039)
chr1 (143-349)||(46862556-46862762)
chr1 (141-349)||(28036795-28037003)
chr1 (143-349)||(39150991-39151197)
chr1 (143-349)||(1929311-1929516)
chr1 (143-349)||(38321645-38321851)
chr1 (143-349)||(8229063-8229269)
chr1 (143-340)||(46370927-46371118)
chr1 (143-349)||(50776997-50777203)
chr1 (143-340)||(1207555-1207750)
chr1 (146-346)||(38817777-38817974)
chr1 (138-340)||(40562539-40562739)
chr1 (166-346)||(9129501-9129679)
[»] scaffold0318 (1 HSPs)
scaffold0318 (143-347)||(16357-16561)
[»] scaffold0061 (1 HSPs)
scaffold0061 (138-349)||(10111-10322)
[»] scaffold0519 (2 HSPs)
scaffold0519 (143-349)||(10687-10893)
scaffold0519 (143-175)||(10593-10625)
[»] chr6 (16 HSPs)
chr6 (143-349)||(29182591-29182797)
chr6 (142-340)||(28541690-28541888)
chr6 (143-349)||(1241109-1241314)
chr6 (140-346)||(30736416-30736622)
chr6 (143-349)||(12350272-12350478)
chr6 (143-321)||(13041972-13042150)
chr6 (143-349)||(16435779-16435985)
chr6 (178-340)||(7271181-7271343)
chr6 (178-337)||(31013601-31013760)
chr6 (178-319)||(1870569-1870710)
chr6 (195-333)||(13210396-13210532)
chr6 (152-261)||(31833747-31833856)
chr6 (140-175)||(1241376-1241411)
chr6 (286-335)||(31833696-31833743)
chr6 (138-175)||(28541582-28541619)
chr6 (143-175)||(16436043-16436075)
[»] scaffold0047 (1 HSPs)
scaffold0047 (143-349)||(69753-69959)
[»] scaffold0532 (1 HSPs)
scaffold0532 (163-340)||(3834-4011)
[»] scaffold0016 (2 HSPs)
scaffold0016 (266-349)||(92263-92346)
scaffold0016 (143-189)||(92374-92420)
[»] scaffold1194 (1 HSPs)
scaffold1194 (142-292)||(977-1128)


Alignment Details
Target: chr3 (Bit Score: 156; Significance: 8e-83; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 156; E-Value: 8e-83
Query Start/End: Original strand, 142 - 349
Target Start/End: Original strand, 40496772 - 40496979
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||    
T  40496772 gtactccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaaacaaaatttgacagatttac 40496871  T
Q  242 tccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaa 341  Q
     ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  40496872 cccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaag 40496971  T
Q  342 gacaactc 349  Q
    | ||||||    
T  40496972 ggcaactc 40496979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 41346047 - 41346253
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     
T  41346047 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 41346146  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |    
T  41346147 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagg 41346246  T
Q  343 acaactc 349  Q
     ||||||    
T  41346247 gcaactc 41346253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 51545662 - 51545868
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||| ||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     
T  51545662 tactccctccgttcctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 51545761  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |    
T  51545762 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 51545861  T
Q  343 acaactc 349  Q
     ||||||    
T  51545862 gcaactc 51545868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 337
Target Start/End: Original strand, 54014237 - 54014431
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     
T  54014237 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 54014336  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  54014337 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaattattacttaaaagtgaaaaagtttcaaaataatga 54014431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 142 - 340
Target Start/End: Original strand, 50676474 - 50676671
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||    
T  50676474 gtactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttac 50676573  T
Q  242 tccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
     ||||||||||| ||||||||| |||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  50676574 cccttataaatactttttgtgg-tcccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaa 50676671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 48169724 - 48169921
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||||||||| ||||||||||||||||||      
T  48169724 tactccctccgtctctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttatc 48169823  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48169824 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 48169921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 152 - 349
Target Start/End: Original strand, 24709019 - 24709216
Alignment:
Q  152 cgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaa 251  Q
    ||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||||||||||||  | |||||||    
T  24709019 cgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttataagcaaaatttgacagatttatcctttataaa 24709118  T
Q  252 taatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    || |||||||||| | ||||||||||||||||  | |||||||||| |||||||||||||||||||||||| ||||||||||||||||| | ||||||    
T  24709119 tactttttgtggtcctcatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatgacaagggcaactc 24709216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 7 - 146
Target Start/End: Complemental strand, 43817458 - 43817319
Alignment:
Q  7 aatgggtccataatcttatacatcgatgatattgatgcaacaagtttttaccataccaataaagtagaagttctgaannnnnnnnatacgatctcagcag 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||        |||||||||||||||    
T  43817458 aatgggtccataatcttatacatcgatgatattgatgcaacaagtttttaccataccaataaagtaaaagtgctgaattttttttatacgatctcagcag 43817359  T
Q  107 taatgtattcataccactaaatcactgcgtttttagtact 146  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  43817358 taatgtattcataccactaaatcactgcgtttttagtact 43817319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 178 - 340
Target Start/End: Original strand, 48737561 - 48737723
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    |||||||||||||| || |||| |||| ||| |||||||| ||| || ||||||||| |||||| | ||||||||| |||||||||| ||||||||||||    
T  48737561 aaaaaatatttgtcttataatacttgatcttttcagatttttaagcagaatttgacaaatttaccctttataaatactttttgtggtccccatgttaaag 48737660  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48737661 tttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 48737723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 12568308 - 12568169
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||     
T  12568308 tactccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttacc 12568209  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgt 282  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  12568208 ccttataaatactttttgtggtccccatgttaaagtttgt 12568169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 143 - 282
Target Start/End: Complemental strand, 13544772 - 13544633
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||| ||||| ||||||||||||||| |||||||||||||||||||     
T  13544772 tactccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgactttctcagatttctaagcaaaatttgacagatttacc 13544673  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgt 282  Q
    ||||||||||| |||||||||| |||||||||||||||||    
T  13544672 ccttataaatactttttgtggtccccatgttaaagtttgt 13544633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 278 - 349
Target Start/End: Complemental strand, 13542957 - 13542886
Alignment:
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    |||||| || |||||||||| |||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  13542957 tttgtagcgaaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactc 13542886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 30459806 - 30459913
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| | ||||||   |||| |||||||||||| ||||  || ||||||||||||  |||||     
T  30459806 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtccctaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacc 30459905  T
Q  243 ccttataa 250  Q
    ||||||||    
T  30459906 ccttataa 30459913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 24 - 59
Target Start/End: Complemental strand, 43817627 - 43817592
Alignment:
Q  24 atacatcgatgatattgatgcaacaagtttttacca 59  Q
    ||||||||||||||||||||||||||||||||||||    
T  43817627 atacatcgatgatattgatgcaacaagtttttacca 43817592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Original strand, 38492049 - 38492077
Alignment:
Q  140 tagtactccctccgtccctgaataagtga 168  Q
    |||||||||||||||||||||||||||||    
T  38492049 tagtactccctccgtccctgaataagtga 38492077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 140 - 168
Target Start/End: Complemental strand, 41346350 - 41346322
Alignment:
Q  140 tagtactccctccgtccctgaataagtga 168  Q
    |||||||||||||||||||||||||||||    
T  41346350 tagtactccctccgtccctgaataagtga 41346322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 139 - 175
Target Start/End: Complemental strand, 50676777 - 50676741
Alignment:
Q  139 ttagtactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  50676777 ttagtactccctccgtcccttaataagtgacctattt 50676741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 154; Significance: 1e-81; HSPs: 25)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 140 - 349
Target Start/End: Complemental strand, 40071752 - 40071543
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattt 239  Q
    ||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  40071752 tagtactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagattt 40071653  T
Q  240 actccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgaca 339  Q
    || ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||| ||||||||||||||||||||||||||||||||    
T  40071652 accccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattgcttaaaagtgaaaaagtttcaaaataatgaca 40071553  T
Q  340 aagacaactc 349  Q
    | | ||||||    
T  40071552 agggcaactc 40071543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 925436 - 925230
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||| |||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||||||||||||||||| |||||||||||||||||||     
T  925436 tactcccaccgtccctgaataagtgacctatttgtaaaaaatatttatcctacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 925337  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  925336 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 925237  T
Q  343 acaactc 349  Q
     ||||||    
T  925236 gcaactc 925230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 54438457 - 54438251
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||     
T  54438457 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaagcaaaatttgacagatttacc 54438358  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||| ||||||||||||| |    
T  54438357 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagg 54438258  T
Q  343 acaactc 349  Q
     ||||||    
T  54438257 gcaactc 54438251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 17493753 - 17493959
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||  |||||| |||| |||||||||||||||| |||||||||||||||||||     
T  17493753 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtctcacaatacttgatcttctcagatttctaagcaaaatttgacagatttacc 17493852  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||| | |||||||||| ||||||||||||||||||  ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  17493853 ccttataaaaactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataattattacttaaaagtgaaaaagtttcaaaataatgacaagg 17493952  T
Q  343 acaactc 349  Q
     ||||||    
T  17493953 gcaactc 17493959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 20789673 - 20789870
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||| |||||||||||||||| |||||||||| |||||||||||||||| | |||| |||| ||||||||||||||||  |||||||||||||||||      
T  20789673 tactctctccgtccctgaataaatgatctatttgtaaaaaatatttgtcccataatacttgatcttctcagatttctaagtaaaatttgacagatttatc 20789772  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20789773 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 20789870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 146 - 349
Target Start/End: Complemental strand, 37065050 - 37064847
Alignment:
Q  146 tccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactcct 245  Q
    |||||||||||||||||||||||  ||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| |||||| |||    
T  37065050 tccctccgtccctgaataagtgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacatatttacccct 37064951  T
Q  246 tataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagaca 345  Q
    |||||||| |||||||||| | ||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||| |||||||| | ||    
T  37064950 tataaatactttttgtggtcctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaaaaatgacaagggca 37064851  T
Q  346 actc 349  Q
    ||||    
T  37064850 actc 37064847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 34408957 - 34408751
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| | |||| ||||||||||||||||||||   ||||||||||||||||||     
T  34408957 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaggtaaaatttgacagatttacc 34408858  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| | ||||||||||||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  34408857 ccttataaatactttttgtggtccacatgttaaagtttgtagtataacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 34408758  T
Q  343 acaactc 349  Q
     ||||||    
T  34408757 gcaactc 34408751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 39787992 - 39788199
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaa-aatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||||||| || ||||||||| |||||| ||||| ||||||||| | |||||| |||||||| |||||||||||| |||||||||||||||||||    
T  39787992 tactccctccgtctctaaataagtgacctatttgtaaaaaaatatttgttccacaatacttgaccttatcagatttctaagcaaaatttgacagatttac 39788091  T
Q  242 tccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaa 341  Q
     ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||     
T  39788092 cccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaag 39788191  T
Q  342 gacaactc 349  Q
    | ||||||    
T  39788192 ggcaactc 39788199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 150 - 349
Target Start/End: Original strand, 47199493 - 47199692
Alignment:
Q  150 tccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttata 249  Q
    ||||||| ||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||  |||||||| |||||||||| || ||||    
T  47199493 tccgtccgtgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttaacagatttaccccatata 47199592  T
Q  250 aataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    |||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||    
T  47199593 aatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagttttaaaataatgacaagggcaactc 47199692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 32218237 - 32218040
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||| |||||||||| ||||  | | ||||||  ||||||||||||||||| |||| ||||  ||||||||||| ||| || ||||||||||||||||     
T  32218237 tactctctccgtccctcaatacttcacctatttgaaaaaaatatttgtcctataatacttgattttctcagatttttaagcagaatttgacagatttacc 32218138  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||||||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  32218137 ccttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 32218040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 141 - 340
Target Start/End: Original strand, 21240324 - 21240523
Alignment:
Q  141 agtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattta 240  Q
    |||||||||||||||||| ||||  ||| ||||||  ||||||||||||||| | |||| |||||||||||||| ||||||  | |||||||||||||||    
T  21240324 agtactccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccataatacttgaccttctcagacttctaagtagaatttgacagattta 21240423  T
Q  241 ctccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    | || |||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||| |||||||||||||||||| ||||||    
T  21240424 ccccatataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaatagtgacaa 21240523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 171 - 346
Target Start/End: Complemental strand, 53509914 - 53509739
Alignment:
Q  171 tatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccat 270  Q
    |||||| ||||||||||||| | ||||||||||||||| ||||||||||||  | ||||||||| ||||| |||||||||||| |||||||| | |||||    
T  53509914 tatttagaaaaaatatttgttccacaatatttgaccttatcagatttctaaggagaatttgacatatttattccttataaatactttttgtgatccccat 53509815  T
Q  271 gttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaa 346  Q
    |||||| ||||||  |||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||    
T  53509814 gttaaaatttgtagtggaacaaagaaaataatcattatttaaaagtgaaaaagtttcaaaataatgacaatgacaa 53509739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 196 - 340
Target Start/End: Original strand, 52101101 - 52101245
Alignment:
Q  196 aatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaaga 295  Q
    |||||| ||||||||||||||| ||| ||||||||||||||||||| | ||||||||| |||||||||||||||||||||||||||||  ||||||||||    
T  52101101 aatattcgaccttctcagatttataagcaaaatttgacagatttaccctttataaatactttttgtggttcccatgttaaagtttgtagtggaacaaaga 52101200  T
Q  296 aaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    |||||| |||||||||||||||||||| |||||||||||||||||    
T  52101201 aaataaccattacttaaaagtgaaaaaatttcaaaataatgacaa 52101245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 172 - 349
Target Start/End: Complemental strand, 33801053 - 33800877
Alignment:
Q  172 atttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatg 271  Q
    |||| |||||||||||||| ||| |||| |||||||||||||||||||||  ||||||||||||||||||  |||||||||| |||| ||||| |||||     
T  33801053 atttgtaaaaaatatttgttctataatacttgaccttctcagatttctaagtaaaatttgacagatttacctcttataaatactttt-gtggtccccata 33800955  T
Q  272 ttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    ||||||||||||  |||||||||||| ||||||||| |||||||||||||||||||||||| ||||||| | ||||||    
T  33800954 ttaaagtttgtagtggaacaaagaaagtaatcattatttaaaagtgaaaaagtttcaaaatgatgacaagggcaactc 33800877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 143 - 270
Target Start/End: Complemental strand, 51744784 - 51744657
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||     
T  51744784 tactccctccgtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttacc 51744685  T
Q  243 ccttataaataatttttgtggttcccat 270  Q
    ||||||||||| |||||||||| |||||    
T  51744684 ccttataaatactttttgtggtccccat 51744657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 178 - 346
Target Start/End: Complemental strand, 28910421 - 28910255
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||| ||||| ||||| |||||||||||||| ||| || ||||||||| |||||| ||||||||||| ||||||||||| |||||| ||||    
T  28910421 aaaaaatatttgttctacagtatttaaccttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtttccatgtaaaag 28910322  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaa 346  Q
    ||| ||  |||||||||||| |||||||||||||||||||  || ||||||||||||| |||| |||||    
T  28910321 tttctagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataataacaaggacaa 28910255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 150 - 340
Target Start/End: Original strand, 46870614 - 46870802
Alignment:
Q  150 tccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttata 249  Q
    ||||||||| ||||  ||| ||||||| ||||||||||||||| |||||| ||||||| ||||||||| |||  | ||||||||| |||||  |||||||    
T  46870614 tccgtccctcaatacttgacctatttagaaaaaatatttgtcccacaatacttgacctgctcagatttttaagtacaatttgacaaatttatcccttata 46870713  T
Q  250 aataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    |||| |||||||||| ||||||| ||||||||||  |||||||||||| | |||||||||||||||||  || ||||||||||||| ||||    
T  46870714 aatactttttgtggtccccatgtaaaagtttgtagtggaacaaagaaagtcatcattacttaaaagtg--aaggtttcaaaataataacaa 46870802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 3172284 - 3172129
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||||| |||||| ||||| |||||| |||||||| || ||||||||| ||||||   ||||||||| ||||||||||  | |||| ||||    
T  3172284 aaaaaatatttgtcccacaatacttgactttctcaaatttctaagcagaatttgacaaatttaccttttataaatactttttgtggtctcaatgtaaaag 3172185  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
    ||||||  |||||||||||| |||||||||||||||||||  || |||||||||||||    
T  3172184 tttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataat 3172129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 138 - 314
Target Start/End: Original strand, 41555457 - 41555633
Alignment:
Q  138 tttagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagat 237  Q
    |||| |||||||||||||||  ||||  ||| ||||||  |||||| ||||||||  ||||| |||||||||||| |||| ||| |  |||||||||  |    
T  41555457 tttattactccctccgtcccgcaatacttgacctatttggaaaaaaaatttgtcccgcaataattgaccttctcaaatttttaagcttaatttgacaagt 41555556  T
Q  238 ttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaa 314  Q
    |||| |||||||  || ||||||||||  | |||| ||||||||||  | |||||||||| ||||||||||||||||    
T  41555557 ttaccccttatagttactttttgtggtctctatgtaaaagtttgtagtgaaacaaagaaagtaatcattacttaaaa 41555633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 143 - 234
Target Start/End: Original strand, 10441143 - 10441235
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttat-aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgaca 234  Q
    |||||||||||||||||||||||||| |||||| | |||||| |||||||| | |||| |||||||||||| ||||  || ||||||||||||    
T  10441143 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaatttgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgaca 10441235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 303 - 340
Target Start/End: Complemental strand, 51744659 - 51744622
Alignment:
Q  303 cattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  51744659 cattacttaaaagtgaacaagtttcaaaataatgacaa 51744622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 234
Target Start/End: Complemental strand, 28690189 - 28690104
Alignment:
Q  148 cctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgaca 234  Q
    ||||||||||||||||| |||  ||||| ||||||| ||| |||  | ||||||||||||||||| ||||  || ||||||||||||    
T  28690189 cctccgtccctgaataactgacatatttgtaaaaaaaatt-gtcgcaaaatatttgaccttctcaaattttaaagcaaaatttgaca 28690104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 175
Target Start/End: Complemental strand, 20789973 - 20789940
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctattt 175  Q
    ||||||||||||| ||||||||||||||||||||    
T  20789973 gtactccctccgttcctgaataagtgatctattt 20789940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 34408657 - 34408689
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  34408657 tactccctccgtccctgaataagtgacctattt 34408689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 47199786 - 47199754
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||| ||||||||||||||||||||    
T  47199786 tactccctccgtacctgaataagtgatctattt 47199754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 151; Significance: 8e-80; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 29737405 - 29737611
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||     
T  29737405 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttacc 29737504  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  29737505 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 29737604  T
Q  343 acaactc 349  Q
     ||||||    
T  29737605 gcaactc 29737611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 4040947 - 4041153
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||| |||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||| |||||||     
T  4040947 tactccctccgtctctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacggatttacc 4041046  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| || ||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  4041047 ccttataaatacttgttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 4041146  T
Q  343 acaactc 349  Q
    |||||||    
T  4041147 acaactc 4041153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 40232415 - 40232209
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||     
T  40232415 tactccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttacc 40232316  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  40232315 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 40232216  T
Q  343 acaactc 349  Q
     ||||||    
T  40232215 gcaactc 40232209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 6392271 - 6392468
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||| ||||||| ||| |||||||||||||||| |||||||||||||||| |||||| || |||||||||||||||||| |||||||||||||||||||     
T  6392271 tacttcctccgttccttaataagtgatctatttgtaaaaaatatttgtcccacaatactttaccttctcagatttctaagcaaaatttgacagatttacc 6392370  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  6392371 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaattaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 6392468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 27596385 - 27596189
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||||||     
T  27596385 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttacc 27596286  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    | ||||||||| ||||||||| |||||||||||||||||||  | |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27596285 ctttataaatactttttgtgg-tcccatgttaaagtttgtagtgaaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 27596189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 41427948 - 41427751
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||| | ||||||||| |||||| |||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||||     
T  41427948 tactccctccgtccttaaataagtgacctatttgtaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagatttacc 41427849  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| ||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  41427848 ccttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 41427751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 137; E-Value: 2e-71
Query Start/End: Original strand, 145 - 340
Target Start/End: Complemental strand, 25943943 - 25943750
Alignment:
Q  145 ctccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactcc 244  Q
    |||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||    
T  25943943 ctccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacccc 25943844  T
Q  245 ttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    |||||||||   ||| |||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  25943843 ttataaata--ctttatggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 25943750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 142 - 349
Target Start/End: Complemental strand, 31689654 - 31689447
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||| ||||||||||||||||| |||||| |||||||||| ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||    
T  31689654 gtactcccttcgtccctgaataagtgacctatttgtaaaaaatatctgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttac 31689555  T
Q  242 tccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaa 341  Q
     ||||||| ||| |||||||||| | ||||||||||||| ||  | |||||||||| ||||||||  ||||||||||||||||||||||||||||||||     
T  31689554 cccttatatatactttttgtggtcctcatgttaaagtttatagtgaaacaaagaaagtaatcattttttaaaagtgaaaaagtttcaaaataatgacaag 31689455  T
Q  342 gacaactc 349  Q
    | ||||||    
T  31689454 ggcaactc 31689447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 143 - 326
Target Start/End: Complemental strand, 24300444 - 24300261
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||  ||||||||||| |||||| |||||||||||||||| |||||| |||||||| ||| |||||||| |||||||||||||||||||     
T  24300444 tactccctccgtctttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcaaatttctaagcaaaatttgacagatttacc 24300345  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagttt 326  Q
    ||||||||||| |||||||||| ||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||    
T  24300344 ccttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagttt 24300261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 38276845 - 38276648
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||  ||| ||||||  ||||||||||||||| |||||| |||||||| ||| |||||||| || ||||||||||||||||     
T  38276845 tactccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttttcatatttctaagcagaatttgacagatttacc 38276746  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| | ||| ||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  38276745 ccttataaatactttttgtggtcctcatattaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 38276648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 21443098 - 21442903
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||  ||| ||||||  ||||||||||||||| |||||| ||||||||||||||||| |||  | ||||||||| |||||      
T  21443098 tactccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgaccttctcagatttttaagtagaatttgacaaatttatc 21442999  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| ||||||||||  |||||| |||||||| |  |||| ||||||| ||| |||||||||||||||  |||||||||||||||| ||||    
T  21442998 ccttataaatactttttgtggtctccatgtaaaagtttgcagtggaataaagaaagtaaccattacttaaaagtg--aaagtttcaaaataataacaa 21442903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 178 - 346
Target Start/End: Original strand, 48838095 - 48838261
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||||| |||||| ||||| ||||||||||| ||| || ||||||||| |||||| ||||||||||| ||||||||||  |||||| ||||    
T  48838095 aaaaaatatttgtcccacaatacttgactttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtggtctccatgtaaaag 48838194  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaa 346  Q
    | ||||  |||||||||||| |||||||||||||||||||  ||||||| |||||||| |||| |||||    
T  48838195 tgtgtagtggaacaaagaaagtaatcattacttaaaagtg--aaagttttaaaataataacaaggacaa 48838261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 22337710 - 22337818
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttat-aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    |||||||||||||||||||||||||| |||||| | |||||| | |||||| | |||| |||||||||||| ||||  || ||||| ||||||  |||||    
T  22337710 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaaattgacaattttac 22337809  T
Q  242 tccttataa 250  Q
     ||||||||    
T  22337810 cccttataa 22337818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 142 - 250
Target Start/End: Original strand, 22619523 - 22619631
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||||||| ||||||||||||| |||||| ||||| | | ||||   | |||| |||| ||||||| ||||  || ||||||||||||  || ||    
T  22619523 gtactccctccgttcctgaataagtgacctatttgtaaaataaaattgtttcaaaatacttgatcttctcaaattttaaagcaaaatttgacaatttgac 22619622  T
Q  242 tccttataa 250  Q
    |||||||||    
T  22619623 tccttataa 22619631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 25943649 - 25943681
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  25943649 tactccctccgtccctgaataagtgacctattt 25943681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 40232115 - 40232147
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||| ||||||||||||||||    
T  40232115 tactccctccgtcccttaataagtgatctattt 40232147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 8e-80; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 43370674 - 43370880
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||     
T  43370674 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttacc 43370773  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  43370774 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 43370873  T
Q  343 acaactc 349  Q
     ||||||    
T  43370874 gcaactc 43370880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 151; E-Value: 8e-80
Query Start/End: Original strand, 143 - 337
Target Start/End: Complemental strand, 45080718 - 45080524
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     
T  45080718 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 45080619  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  45080618 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaacataatga 45080524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 2110220 - 2110426
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||| |||||||||||| |||||||||||||||||||     
T  2110220 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttacc 2110319  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |    
T  2110320 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaaaaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 2110419  T
Q  343 acaactc 349  Q
     ||||||    
T  2110420 gcaactc 2110426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 29193988 - 29194194
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| || ||||| |||||| ||||||||||||||||||||| |||||||||||||||||||     
T  29193988 tactccctccgtccctgaataagtgacctatttgtaaaaaaaatgtgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttacc 29194087  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29194088 ccttataaatactttttgtggtcccgatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 29194187  T
Q  343 acaactc 349  Q
     ||||||    
T  29194188 gcaactc 29194194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 141; E-Value: 7e-74
Query Start/End: Original strand, 145 - 349
Target Start/End: Complemental strand, 28585981 - 28585777
Alignment:
Q  145 ctccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactcc 244  Q
    |||||||||||||||||||||||| |||||| |||||||||||| ||| |||||| || |||||||||||||||||| ||||||||||||||||||| |     
T  28585981 ctccctccgtccctgaataagtgacctatttgtaaaaaatatttatcccacaatacttaaccttctcagatttctaagcaaaatttgacagatttaccct 28585882  T
Q  245 ttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagac 344  Q
    ||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | |    
T  28585881 ttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggc 28585782  T
Q  345 aactc 349  Q
    |||||    
T  28585781 aactc 28585777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 4828389 - 4828183
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| |||||||||  ||||| |||||||||||||||| ||||||||||||||||||| |||||||| |||||||||||| ||||||     
T  4828389 tactccctccgtccctcaataagtgacatatttgtaaaaaatatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacaaatttacc 4828290  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||| ||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  4828289 ccttataaatactttttgtggtccccatgttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 4828190  T
Q  343 acaactc 349  Q
     ||||||    
T  4828189 gcaactc 4828183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 143 - 346
Target Start/End: Complemental strand, 1779372 - 1779169
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||  ||| ||||| | | ||||||||||||| |||||   ||| |||||||||||||||| || ||||| ||||||||||     
T  1779372 tactccctccgtccctcaatacttgacctattaaaagaaaatatttgtcccacaatgcctgatcttctcagatttctaagcagaatttaacagatttacc 1779273  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    | ||||||||| |||||||||| ||||||||||||||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  1779272 ctttataaatactttttgtggtccccatgttaaagtttgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 1779173  T
Q  343 acaa 346  Q
    ||||    
T  1779172 acaa 1779169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 170 - 349
Target Start/End: Complemental strand, 8381589 - 8381410
Alignment:
Q  170 ctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttccca 269  Q
    |||||| |||||||||||||||| || ||| |||||||||||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||||   ||    
T  8381589 ctatttgtaaaaaatatttgtcccacgatacttgaccttctcaaatttctaaataaaatttgacagatttaccccttataaatactttttgtggtcttca 8381490  T
Q  270 tgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    ||||||| ||||||  |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| | ||||||    
T  8381489 tgttaaaatttgtagtggaacaaagaaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaagggcaactc 8381410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 143 - 346
Target Start/End: Complemental strand, 42847207 - 42847006
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||| ||||||||| | ||||  ||| ||||||  ||||||||||||||| | |||| |||||||| |||||||| ||| || ||||||||| ||||||     
T  42847207 tactacctccgtcctttaatatttgacctatttgaaaaaaatatttgtcccataatacttgaccttttcagatttttaagcagaatttgacaaatttacc 42847108  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||| |  |||||| ||||||||||| |||||||||||||||||||||||||||||||||| |  |||||||||||| |||| |    
T  42847107 ccttataaatactttttgtgttctccatgtaaaagtttgtaatggaacaaagaaaataatcattacttaaaagtgaaga--tttcaaaataataacaagg 42847010  T
Q  343 acaa 346  Q
    ||||    
T  42847009 acaa 42847006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 39646591 - 39646437
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||||| |||||||||||| |||||||||||||||| | ||||||||| |||||| ||||||||||| |||||||||| | ||||| ||||    
T  39646591 aaaaaatatttgtcccacaatatttgacattctcagatttctaaatagaatttgacaaatttaccccttataaatactttttgtggtcctcatgtaaaag 39646492  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
    ||||||  |||||||| ||| |||||||||||||||||||  || |||||||||||||    
T  39646491 tttgtagtggaacaaa-aaagtaatcattacttaaaagtg--aaggtttcaaaataat 39646437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 255 - 346
Target Start/End: Original strand, 9370486 - 9370577
Alignment:
Q  255 tttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaa 346  Q
    |||||||| | ||||| ||||||||||||  | |||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||    
T  9370486 tttttgtgatccccatattaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaggacaa 9370577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 25898463 - 25898570
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| | || ||| | |||| | |||||||||| ||||  || |||||||||| |  ||||||    
T  25898463 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaattatcccaaaatactcgaccttctcaaattttaaagcaaaatttgataattttact 25898562  T
Q  243 ccttataa 250  Q
    ||||||||    
T  25898563 ccttataa 25898570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 226 - 340
Target Start/End: Complemental strand, 43377423 - 43377311
Alignment:
Q  226 aatttgacagatttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtt 325  Q
    ||||||||| |||||   |||||||||| ||||||| ||  ||| || ||||||||||  |||||||||||| |||||||||||||||||||  || |||    
T  43377423 aatttgacaaatttatctcttataaatactttttgtagtctccaagtaaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtt 43377326  T
Q  326 tcaaaataatgacaa 340  Q
    |||||||||| ||||    
T  43377325 tcaaaataataacaa 43377311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 143 - 250
Target Start/End: Complemental strand, 31922139 - 31922032
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||| |||||||||| |||||||||  ||||| ||||||| | |||||| | |||| |||||||||||| ||||  || ||||||||||||  |||||     
T  31922139 tactctctccgtccctaaataagtgacatatttgtaaaaaaaaattgtcccaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacc 31922040  T
Q  243 ccttataa 250  Q
    ||||||||    
T  31922039 ccttataa 31922032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 179 - 264
Target Start/End: Original strand, 16964852 - 16964937
Alignment:
Q  179 aaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggt 264  Q
    ||||| ||| |||| |||||| |||||||||||| |||| |||  |||||||||||  ||||| ||||||||||| ||||||||||    
T  16964852 aaaaaaattcgtcccacaatacttgaccttctcaaatttttaagtaaaatttgacaagtttaccccttataaatactttttgtggt 16964937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 142 - 175
Target Start/End: Original strand, 8381315 - 8381348
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctattt 175  Q
    ||||||||||||||||||||||||||||||||||    
T  8381315 gtactccctccgtccctgaataagtgatctattt 8381348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 31921616 - 31921653
Alignment:
Q  138 tttagtactccctccgtccctgaataagtgatctattt 175  Q
    |||| |||||||||||||||||||||||||||||||||    
T  31921616 tttactactccctccgtccctgaataagtgatctattt 31921653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 175
Target Start/End: Original strand, 45080417 - 45080452
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctattt 175  Q
    ||||||||||||||||||||||||||||| ||||||    
T  45080417 tagtactccctccgtccctgaataagtgacctattt 45080452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 29194288 - 29194256
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  29194288 tactccctccgtccctgaataagtgacctattt 29194256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 150; Significance: 3e-79; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 140 - 349
Target Start/End: Original strand, 27820770 - 27820979
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattt 239  Q
    |||||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  27820770 tagtactccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagattt 27820869  T
Q  240 actccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgaca 339  Q
    || ||||||||||| |||||||||| ||||||||||| ||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  27820870 accccttataaatactttttgtggtccccatgttaaaatttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgaca 27820969  T
Q  340 aagacaactc 349  Q
    | | ||||||    
T  27820970 agggcaactc 27820979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 11254500 - 11254706
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| | |||||| |||||| |||||||| |||||||||||| |||||||||||||||||||     
T  11254500 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttacc 11254599  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    | ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  11254600 ctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 11254699  T
Q  343 acaactc 349  Q
     ||||||    
T  11254700 gcaactc 11254706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 38070195 - 38069989
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||| |||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||  |||||||||||||||||||     
T  38070195 tactccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttacc 38070096  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    | ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |    
T  38070095 cattataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaaatgaaaaagtttcaaaataatgacaagg 38069996  T
Q  343 acaactc 349  Q
     ||||||    
T  38069995 gcaactc 38069989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 17493526 - 17493723
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||| ||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||||     
T  17493526 tacttcctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgatcttctcagatttctaaacaaaatttgacagatttacc 17493625  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||| |||||||||||||||| |||||||||||||||||||||||||    
T  17493626 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaagtaatcattacttaaaaatgaaaaagtttcaaaataatgacaa 17493723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 140 - 337
Target Start/End: Original strand, 39906908 - 39907102
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattt 239  Q
    ||||||| |||||||||||||||||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  39906908 tagtacttcctccgtccctgaataagtgatctatttataaaa-atatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagattt 39907006  T
Q  240 actccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    || ||||||||||| ||||||||||  |||||||||||||||||  |||||||||||| |||||||||||||||||||||||| ||||||||||||||    
T  39907007 accccttataaatactttttgtggt--ccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaaatttcaaaataatga 39907102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 18575028 - 18575234
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| | |||||| |||||| | ||||||||||||||||||| |||||||||||| |||||      
T  18575028 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatactcgaccttctcagatttctaagcaaaatttgacaaatttatc 18575127  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
     |||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  18575128 tcttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 18575227  T
Q  343 acaactc 349  Q
     ||||||    
T  18575228 gcaactc 18575234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 143 - 345
Target Start/End: Complemental strand, 17336270 - 17336068
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||| || ||||  ||| ||||||  ||||||||||||||| | |||| |||||||||| |||||||||| || ||||||||||||||||     
T  17336270 tactccctccgtctctcaatacttgacctattttgaaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttacc 17336171  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||||||||||||||||||| ||  ||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |    
T  17336170 ccttataaatactttttgtggttcccatgttaaagtttctagtggaacaacgaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 17336071  T
Q  343 aca 345  Q
    |||    
T  17336070 aca 17336068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 146 - 340
Target Start/End: Complemental strand, 12738663 - 12738469
Alignment:
Q  146 tccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactcct 245  Q
    |||||||||| || ||||  ||||||||||  ||||||||||||||| | |||| |||||||| |||||||||||| || ||||||||| |||||| |||    
T  12738663 tccctccgtctctcaatacttgatctatttggaaaaaatatttgtcccataatacttgaccttatcagatttctaagcagaatttgacaaatttacccct 12738564  T
Q  246 tataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    |||||||| |||||||| | ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  12738563 tataaatattttttgtgatccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 12738469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 143 - 335
Target Start/End: Original strand, 9753770 - 9753960
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||  ||| ||||||| ||||||||||||||| | |||| |||||||||||| |||||||| || ||||||||| ||||||     
T  9753770 tactccctccgtccctcaatacttgacctatttaaaaaaaatatttgtcccataatacttgaccttctcaaatttctaagcagaatttgacaaatttacc 9753869  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
     |||||||||| ||||||||||  | |||| ||||||||||  | |||||||||| |||||||||||||||||||  || |||||||||||||    
T  9753870 tcttataaatattttttgtggtctcaatgtaaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataat 9753960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 178 - 335
Target Start/End: Complemental strand, 13243811 - 13243656
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||| ||||  ||||||||||||||||||| |||||||| || ||||||||| ||| || ||||||||||| ||||||||||  | |||| ||||    
T  13243811 aaaaaatatatgtctcacaatatttgaccttctcaaatttctaagcagaatttgacaaattcaccccttataaatactttttgtggtctcaatgtaaaag 13243712  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
    ||||||  ||||||||||||||||||||||||||||| ||  || |||||||||||||    
T  13243711 tttgtagtggaacaaagaaaataatcattacttaaaaatg--aaggtttcaaaataat 13243656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 11146770 - 11146877
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||| ||||||| |||||||||||||||||| ||||||| | ||||   | |||| |||||||| ||| ||||  |||||||||||||||  ||||||    
T  11146770 tactccttccgtccttgaataagtgatctatttgtaaaaaaaaattgtttcaaaatacttgaccttatcaaattttaaaacaaaatttgacaattttact 11146869  T
Q  243 ccttataa 250  Q
    ||||||||    
T  11146870 ccttataa 11146877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 11254800 - 11254768
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  11254800 tactccctccgtccctgaataagtgacctattt 11254768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 17493826 - 17493794
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  17493826 tactccctccgtccctgaataagtgacctattt 17493794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 18575328 - 18575296
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  18575328 tactccctccgtccctgaataagtgacctattt 18575296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 147; Significance: 2e-77; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 36982186 - 36982392
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||| |||||||  |||||||||||||||||||     
T  36982186 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaggcaaaatttgacagatttacc 36982285  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||| |||||||||||||||||||||||||||||||||||||||||||||| |    
T  36982286 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 36982385  T
Q  343 acaactc 349  Q
     ||||||    
T  36982386 gcaactc 36982392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 14044056 - 14044253
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||     
T  14044056 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccataatatttgaccttctcagatttctaagcaaaatttgacagatttacc 14044155  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
     |||||||||| |||||||||| ||||||||||||||||||  |||||||| ||| ||||||||| ||||||||||||||||||||||||||||||||    
T  14044156 tcttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaataaagtaatcattatttaaaagtgaaaaagtttcaaaataatgacaa 14044253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 177 - 349
Target Start/End: Complemental strand, 42897640 - 42897468
Alignment:
Q  177 taaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaa 276  Q
    |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||| |||||||||||    
T  42897640 taaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagatttaccccttataaatactttttgtggtccccatgttaaa 42897541  T
Q  277 gtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    |||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  42897540 gtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactc 42897468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 143 - 335
Target Start/End: Complemental strand, 2970964 - 2970775
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||  ||| ||||||  ||||||||||||||| |||||| ||||| |||||| |||||||| || ||||||||| ||||||     
T  2970964 tactccctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgacattctcaaatttctaagcagaatttgacaaatttacc 2970865  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
    || |||||||| ||||||||||  | ||| |||||||||||  |||||||||||| |||||||||||||||||||  || |||||||||||||    
T  2970864 ccgtataaatactttttgtggtctcaatg-taaagtttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaggtttcaaaataat 2970775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 143 - 250
Target Start/End: Original strand, 33403194 - 33403301
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||||||||| ||||||| | |||||||| |||| |||||||||||| ||||  || ||||||||||||  |||||     
T  33403194 tactccctccgtccctgaataagtgatctatttgtaaaaaaaaattgtcctaaaatacttgaccttctcaaattttaaagcaaaatttgacaattttacc 33403293  T
Q  243 ccttataa 250  Q
    ||||||||    
T  33403294 ccttataa 33403301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 36768890 - 36768782
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    ||||||||||||||||||||||||||| |||||| |  |||| | |||||| | |||| | |||||| ||| ||||  || ||||||||||||  |||||    
T  36768890 gtactccctccgtccctgaataagtgacctatttttttaaaaaaattgtcccaaaatactcgaccttatcaaattttaaagcaaaatttgacaattttac 36768791  T
Q  242 tccttataa 250  Q
     ||||||||    
T  36768790 cccttataa 36768782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 14044355 - 14044323
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  14044355 tactccctccgtccctgaataagtgacctattt 14044323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 36982486 - 36982454
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  36982486 tactccctccgtccctgaataagtgacctattt 36982454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 42897374 - 42897406
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  42897374 tactccctccgtccctgaataagtgacctattt 42897406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 147; Significance: 2e-77; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 32045833 - 32046039
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||| | |||||| ||||||||||||||||||||| |||||||||| ||||||||     
T  32045833 tactccctccgtccctgaataagtgatctatttgtaaaaaatatttgttccacaatacttgaccttctcagatttctaagcaaaatttgaaagatttacc 32045932  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |    
T  32045933 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataacgacaagg 32046032  T
Q  343 acaactc 349  Q
     ||||||    
T  32046033 gcaactc 32046039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 46862556 - 46862762
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||| ||| |||||||||||||||||||     
T  46862556 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttttaagcaaaatttgacagatttacc 46862655  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  46862656 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 46862755  T
Q  343 acaactc 349  Q
     ||||||    
T  46862756 gcaactc 46862762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 141 - 349
Target Start/End: Complemental strand, 28037003 - 28036795
Alignment:
Q  141 agtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattta 240  Q
    |||||||||||||||||| ||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||    
T  28037003 agtactccctccgtcccttaataaatgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacagattta 28036904  T
Q  241 ctccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
      ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  28036903 tcccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 28036804  T
Q  341 agacaactc 349  Q
     | ||||||    
T  28036803 gggcaactc 28036795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 39151197 - 39150991
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||| |||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||| |||||||||| |||||||||||||||||||     
T  39151197 tactctctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttcttagatttctaagcaaaatttgacagatttacc 39151098  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| | ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  39151097 ccttataaatactttttgtggtcctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 39150998  T
Q  343 acaactc 349  Q
     ||||||    
T  39150997 gcaactc 39150991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 1929516 - 1929311
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||| ||||||||| |||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||     
T  1929516 tactccctccgtccctaaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagatttacc 1929417  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |    
T  1929416 ccttataaatattttttgtggtccccatgttaaagtttgtagtggaacaaa-aaaaaaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 1929318  T
Q  343 acaactc 349  Q
     ||||||    
T  1929317 gcaactc 1929311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 38321645 - 38321851
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||| ||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||| | |||||||      
T  38321645 tactccctccgtccctgaataactgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttaaaagatttaac 38321744  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  38321745 ccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 38321844  T
Q  343 acaactc 349  Q
     ||||||    
T  38321845 gcaactc 38321851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 8229063 - 8229269
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||| |  ||||| || ||||||| |||||| ||| |||||||||||| ||||||     
T  8229063 tactccctccgtccctgaataagtgacctatttataaaaaatatttgttcctcaatacttaaccttcttagatttttaagcaaaatttgacaaatttacc 8229162  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||||||| ||||||||||||||||||  | || ||||||| |||||||||||||||||||||||||||| ||||||||||||| |    
T  8229163 ccttataaatactttttgtggtccccatgttaaagtttgtagtgaaataaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaagg 8229262  T
Q  343 acaactc 349  Q
     ||||||    
T  8229263 gcaactc 8229269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 143 - 340
Target Start/End: Original strand, 46370927 - 46371118
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||||||| |||||||||||| ||||||     
T  46370927 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttctaagcaaaatttgacaaatttacc 46371026  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| ||||||||| |||||| ||||||||||||  |||||||||||| ||||||||||||     |||||||||||||||||||||||||    
T  46371027 ccttataaatactttttgtgg-tcccatattaaagtttgtagtggaacaaagaaagtaatcattactt-----tgaaaaagtttcaaaataatgacaa 46371118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 50776997 - 50777203
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||| || |||| || |||||||||  ||||| |||||||||||||||| | |||| |||||||||| | |||||||| |||||||||||||||||||     
T  50776997 tactctcttcgtctctaaataagtgacttatttgtaaaaaatatttgtcccataatacttgaccttcttaaatttctaagcaaaatttgacagatttacc 50777096  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||||||| |||||| ||| ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  50777097 ccttataaatactttttggggtccccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 50777196  T
Q  343 acaactc 349  Q
     ||||||    
T  50777197 gcaactc 50777203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 143 - 340
Target Start/End: Complemental strand, 1207750 - 1207555
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||| | ||||  ||| ||||||  |||||||||||||| || |||| ||||||||||||||||||||| || ||||||||||||||||     
T  1207750 tactccctccgtccttcaatatttgacctatttgaaaaaaatatttgtcttataatacttgaccttctcagatttctaagcagaatttgacagatttac- 1207652  T
Q  243 ccttataaataatttttgtggttccc-atgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||||||| |||| |  || ||| |||||||||||||||  ||||||| |||| ||||||||||||||||||||||||||||||||||||||||||    
T  1207651 ccttataaatacttttgg--gtcccctatgttaaagtttgtagaggaacaaggaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 1207555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 146 - 346
Target Start/End: Original strand, 38817777 - 38817974
Alignment:
Q  146 tccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactcct 245  Q
    |||||| |||||| ||||  ||||||||||  ||||||||||||||| | |||||||||| |||||| |||||||| |||||||||| | |||||| |||    
T  38817777 tccctctgtccctcaatacttgatctatttgaaaaaaatatttgtcccataatatttgactttctcaaatttctaagcaaaatttgataaatttacccct 38817876  T
Q  246 tataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagaca 345  Q
    |||||||| |||||||||| ||||||| ||||||||||  | |||||||||| |||| ||||||||||| ||  || ||||||||||||| |||| ||||    
T  38817877 tataaatactttttgtggtccccatgtaaaagtttgtagtgaaacaaagaaagtaataattacttaaaa-tg--aaggtttcaaaataataacaaggaca 38817973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 138 - 340
Target Start/End: Complemental strand, 40562739 - 40562539
Alignment:
Q  138 tttagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagat 237  Q
    |||| |||||||||||| ||| ||||  ||| ||||||  ||||||||||||||| |||||| ||||| |||||| |||| ||| || ||||||| | ||    
T  40562739 tttattactccctccgtacctcaatacttgacctatttgaaaaaaatatttgtcccacaatacttgacattctcatatttttaagcagaatttgataaat 40562640  T
Q  238 ttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    |||| ||||||||||| | ||||||||  |||||| ||||||||||   ||||||||||| ||||||||||||||||||  ||||||||||||||||| |    
T  40562639 ttaccccttataaatactctttgtggtctccatgtaaaagtttgtagtagaacaaagaaagtaatcattacttaaaagt--aaaagtttcaaaataataa 40562542  T
Q  338 caa 340  Q
    |||    
T  40562541 caa 40562539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 74; E-Value: 7e-34
Query Start/End: Original strand, 166 - 346
Target Start/End: Complemental strand, 9129679 - 9129501
Alignment:
Q  166 tgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggtt 265  Q
    ||||||||||  ||||||||||| ||  | ||||||| |||||||||||||| ||| || ||||||| | |||||| ||||||||||| ||||||||||     
T  9129679 tgatctatttgaaaaaaatatttatctcataatattttaccttctcagatttttaagcagaatttgataaatttaccccttataaatattttttgtggtc 9129580  T
Q  266 cccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaa 346  Q
     |||||| ||| ||||||  |||||||||||| |||||||||||||||||||  ||||||| |||||||| |||| |||||    
T  9129579 tccatgtaaaattttgtagtggaacaaagaaagtaatcattacttaaaagtg--aaagtttaaaaataataacaaggacaa 9129501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0318 (Bit Score: 145; Significance: 3e-76; HSPs: 1)
Name: scaffold0318
Description:

Target: scaffold0318; HSP #1
Raw Score: 145; E-Value: 3e-76
Query Start/End: Original strand, 143 - 347
Target Start/End: Original strand, 16357 - 16561
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||     
T  16357 tactccctccgtccctgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttacc 16456  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    | ||||||||| |||||||||| ||||||||||||||||||  | |||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  16457 ctttataaatactttttgtggtccccatgttaaagtttgtagtgaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 16556  T
Q  343 acaac 347  Q
     ||||    
T  16557 gcaac 16561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 144; Significance: 1e-75; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 138 - 349
Target Start/End: Complemental strand, 10322 - 10111
Alignment:
Q  138 tttagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagat 237  Q
    ||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||    
T  10322 tttagtactccctccgttcctgaataagtgatctatttgtaaaaaatatttgtcccacaatacttgaccttctcatatttctaagcaaaatttgacagat 10223  T
Q  238 ttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    |||  ||||||||||| |||||||||| ||||||||||||||| ||  |||||||||||| ||||||||||||||||||||||||||||||||||||| |    
T  10222 ttatcccttataaatactttttgtggtccccatgttaaagtttatagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataataa 10123  T
Q  338 caaagacaactc 349  Q
    ||| | ||||||    
T  10122 caagggcaactc 10111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519 (Bit Score: 143; Significance: 4e-75; HSPs: 2)
Name: scaffold0519
Description:

Target: scaffold0519; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Complemental strand, 10893 - 10687
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||||||||||||||| |||||| ||||||| | |||||| |||||| |||||||| |||||||||||| |||||||||||||||||||     
T  10893 tactccctccgtccctgaataagtgacctatttgtaaaaaaaaattgtcccacaatacttgaccttatcagatttctaagcaaaatttgacagatttacc 10794  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    | ||||||||| |||||||||| ||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  10793 ctttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 10694  T
Q  343 acaactc 349  Q
     ||||||    
T  10693 gcaactc 10687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0519; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Original strand, 10593 - 10625
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  10593 tactccctccgtccctgaataagtgacctattt 10625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 143; Significance: 4e-75; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 29182591 - 29182797
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||| |||||||||||||||| |||||| ||||||||||||||||||||||| ||||||||||||||||||||  |||||||||||||||||||     
T  29182591 tactccctctgtccctgaataagtgacctatttgtaaaaaatatttgtcctacaatacttgaccttctcagatttctaggcaaaatttgacagatttacc 29182690  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
     ||||||||||  ||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  29182691 tcttataaatacattttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 29182790  T
Q  343 acaactc 349  Q
     ||||||    
T  29182791 gcaactc 29182797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 142 - 340
Target Start/End: Complemental strand, 28541888 - 28541690
Alignment:
Q  142 gtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttac 241  Q
    |||||||||||||| ||||||||||||  ||||| |||||||||||| ||| |||||| ||||||||||||||||||||  |||||||||||||||||||    
T  28541888 gtactccctccgtctctgaataagtgacttatttgtaaaaaatatttatcccacaatacttgaccttctcagatttctaggcaaaatttgacagatttac 28541789  T
Q  242 tccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
     ||||||||||| |||||||||| ||||||||||||||||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  28541788 cccttataaatactttttgtggtccccatgttaaagtttgtagtggaacaaaaaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 28541690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 1241109 - 1241314
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||| |||| |||||||||||||||| |||||||||||||||||||     
T  1241109 tactccctccgtccctgaataagtgatctatttgtaaaaaatatttgtcccacaatacttgaacttctcagatttctaagcaaaatttgacagatttacc 1241208  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
     |||||||||| |||||||||| ||||| |||||||||| |  |||||||||||| |||||||||||||||| ||||||||||||||||||||||||| |    
T  1241209 tcttataaatactttttgtggtccccatattaaagtttgcagtggaacaaagaaagtaatcattacttaaaa-tgaaaaagtttcaaaataatgacaagg 1241307  T
Q  343 acaactc 349  Q
     ||||||    
T  1241308 gcaactc 1241314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 140 - 346
Target Start/End: Original strand, 30736416 - 30736622
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattt 239  Q
    ||||||| ||||||||||| ||||  ||| ||||||  ||||||||||||||| ||||||||||| |||||||||||||||| |||||||||||||||||    
T  30736416 tagtacttcctccgtccctcaatacttgacctatttgaaaaaaatatttgtcccacaatatttgatcttctcagatttctaagcaaaatttgacagattt 30736515  T
Q  240 actccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgaca 339  Q
    || ||||||||||| |||||||  | ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  30736516 accccttataaatactttttgtaatccccatgttaaagtttgtagaggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgaca 30736615  T
Q  340 aagacaa 346  Q
    | |||||    
T  30736616 aggacaa 30736622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 12350272 - 12350478
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||| |||||||| |||||||||||| |||||| |||||| ||||||||| ||||||||||||||||||| |||||||| |||||||||||||||||||     
T  12350272 tacttcctccgtctctgaataagtgacctatttgtaaaaagtatttgtcccacaatatttgaccttctcaaatttctaagcaaaatttgacagatttacc 12350371  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    ||||||| ||| |||||||||| | ||||||||||||||||    |||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  12350372 ccttatatatactttttgtggtcctcatgttaaagtttgtagtaaaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 12350471  T
Q  343 acaactc 349  Q
     ||||||    
T  12350472 gcaactc 12350478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 143 - 321
Target Start/End: Original strand, 13041972 - 13042150
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||||||||||||| ||||||||||| |||||| |||||||||||||||| |||||| ||||||||||||||||| ||| |||||||||||||||||||     
T  13041972 tactccctccgtccttgaataagtgacctatttgtaaaaaatatttgtcccacaatacttgaccttctcagatttttaagcaaaatttgacagatttacc 13042071  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaa 321  Q
    ||||||||||| |||||||||| || |||||||||||||||  ||||||||||||||||||||||||||||||||||||    
T  13042072 ccttataaatactttttgtggtccctatgttaaagtttgtagtggaacaaagaaaataatcattacttaaaagtgaaaa 13042150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 16435779 - 16435985
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    |||| ||||||||||| ||||| |||  ||||| |||||||||||||||| |||||| |||||||||||| ||||||||  ||||||||||||||||||     
T  16435779 tacttcctccgtccctaaataaatgacttatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaaggaaaatttgacagatttacc 16435878  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
    || |||||||| |||||||||||| ||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  16435879 ccatataaatactttttgtggttctcatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 16435978  T
Q  343 acaactc 349  Q
     ||||||    
T  16435979 gcaactc 16435985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 178 - 340
Target Start/End: Complemental strand, 7271343 - 7271181
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||||| | |||| |||||||||| |||||||||| || |||||||||||||||| ||||||||||| ||||||| || ||||||||||||    
T  7271343 aaaaaatatttgtcccataatacttgaccttcttagatttctaagcagaatttgacagatttaccccttataaatactttttgttgtccccatgttaaag 7271244  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    ||||||  |||| ||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  7271243 tttgtagtggaataaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaa 7271181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 178 - 337
Target Start/End: Complemental strand, 31013760 - 31013601
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||| | |||||| |||| |||||||||||||||| || |||||||| ||||||  ||||||||||| |||||||||  ||||| ||||||    
T  31013760 aaaaaatatttgttccacaatacttgatcttctcagatttctaagcagaatttgacggatttatcccttataaatattttttgtggcccccatattaaag 31013661  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 337  Q
    ||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31013660 tttgtagtagaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatga 31013601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 178 - 319
Target Start/End: Original strand, 1870569 - 1870710
Alignment:
Q  178 aaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaag 277  Q
    ||||||||||||| | |||||| ||||||||||||||||| ||| || ||||||||| |||||| ||||||||||| |||||||| |  |||||| ||||    
T  1870569 aaaaaatatttgttcaacaatacttgaccttctcagatttttaagcagaatttgacaaatttaccccttataaatactttttgtgatctccatgtaaaag 1870668  T
Q  278 tttgtaacggaacaaagaaaataatcattacttaaaagtgaa 319  Q
    ||||||  |||||||||||| |||||||||||||||||||||    
T  1870669 tttgtagtggaacaaagaaagtaatcattacttaaaagtgaa 1870710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 195 - 333
Target Start/End: Original strand, 13210396 - 13210532
Alignment:
Q  195 caatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaag 294  Q
    ||||| |||||||||||| |||| ||| || ||||||||| |||||| | ||||||||| ||||||||||  |||||| ||||||||||  |||||||||    
T  13210396 caatacttgaccttctcaaatttttaagcagaatttgacaaatttacccattataaatattttttgtggtctccatgtaaaagtttgtagtggaacaaag 13210495  T
Q  295 aaaataatcattacttaaaagtgaaaaagtttcaaaata 333  Q
    ||| ||||  |||||||||||||  ||||||||||||||    
T  13210496 aaagtaattcttacttaaaagtg--aaagtttcaaaata 13210532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 152 - 261
Target Start/End: Complemental strand, 31833856 - 31833747
Alignment:
Q  152 cgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaa 251  Q
    ||||||| ||||  ||||||||||  ||||||||||||||| || ||| ||||||||||||||||| ||| || ||||||||| |||||  ||||| |||    
T  31833856 cgtccctcaatacttgatctatttgaaaaaaatatttgtcccacgatacttgaccttctcagatttttaagcataatttgacaaatttatcccttaaaaa 31833757  T
Q  252 taatttttgt 261  Q
    || |||||||    
T  31833756 tactttttgt 31833747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 140 - 175
Target Start/End: Complemental strand, 1241411 - 1241376
Alignment:
Q  140 tagtactccctccgtccctgaataagtgatctattt 175  Q
    ||||||||||||||||||||||||||| ||||||||    
T  1241411 tagtactccctccgtccctgaataagtaatctattt 1241376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 286 - 335
Target Start/End: Complemental strand, 31833743 - 31833696
Alignment:
Q  286 ggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataat 335  Q
    ||||||||||||||||||||||||||||| ||  || |||||||||||||    
T  31833743 ggaacaaagaaaataatcattacttaaaaatg--aaggtttcaaaataat 31833696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 138 - 175
Target Start/End: Original strand, 28541582 - 28541619
Alignment:
Q  138 tttagtactccctccgtccctgaataagtgatctattt 175  Q
    ||||||||||||||||||||| ||||||||| ||||||    
T  28541582 tttagtactccctccgtccctaaataagtgacctattt 28541619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 143 - 175
Target Start/End: Complemental strand, 16436075 - 16436043
Alignment:
Q  143 tactccctccgtccctgaataagtgatctattt 175  Q
    |||||||||||||||||||||||||| ||||||    
T  16436075 tactccctccgtccctgaataagtgacctattt 16436043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0047 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 143 - 349
Target Start/End: Original strand, 69753 - 69959
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttact 242  Q
    ||||||||||||||||||||||||||  ||||| |||||||||||||||| |||||| |||||||||||| |||||||| |||||||||||||||||||     
T  69753 tactccctccgtccctgaataagtgacatatttgtaaaaaatatttgtcccacaatacttgaccttctcaaatttctaagcaaaatttgacagatttacc 69852  T
Q  243 ccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaag 342  Q
     |||||||||| |||||||| | ||| | ||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |    
T  69853 gcttataaatactttttgtgatccccgtattaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagg 69952  T
Q  343 acaactc 349  Q
    |||||||    
T  69953 acaactc 69959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 118; Significance: 4e-60; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 163 - 340
Target Start/End: Original strand, 3834 - 4011
Alignment:
Q  163 aagtgatctatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagatttactccttataaataatttttgtg 262  Q
    |||||| |||||| |||||||||||||||| | |||| ||||||||||||||||||||| |||||||||||||||||||  |||||||||| |||||| |    
T  3834 aagtgacctatttgtaaaaaatatttgtcccataatacttgaccttctcagatttctaagcaaaatttgacagatttacctcttataaatactttttgcg 3933  T
Q  263 gttcccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaa 340  Q
    || | ||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||| |||||||||||||    
T  3934 gtcctcatgttaaagtttgtaatggaacaaagaaagtaatcattacttaaaagtgaaaaagttttaaaataatgacaa 4011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 64; Significance: 6e-28; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 266 - 349
Target Start/End: Complemental strand, 92346 - 92263
Alignment:
Q  266 cccatgttaaagtttgtaacggaacaaagaaaataatcattacttaaaagtgaaaaagtttcaaaataatgacaaagacaactc 349  Q
    ||||||||||||||||||  |||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||    
T  92346 cccatgttaaagtttgtagtggaacaaagaaagtaatcattacttaaaagtgaaaaagtttcaaaataatgacaagggcaactc 92263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 143 - 189
Target Start/End: Complemental strand, 92420 - 92374
Alignment:
Q  143 tactccctccgtccctgaataagtgatctatttataaaaaatatttg 189  Q
    ||||||||||||| ||||||||||||||||||| |||||||||||||    
T  92420 tactccctccgtctctgaataagtgatctatttgtaaaaaatatttg 92374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1194 (Bit Score: 56; Significance: 4e-23; HSPs: 1)
Name: scaffold1194
Description:

Target: scaffold1194; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 142 - 292
Target Start/End: Original strand, 977 - 1128
Alignment:
Q  142 gtactccctccgtccctgaataagtgatc-tatttataaaaaatatttgtcctacaatatttgaccttctcagatttctaaacaaaatttgacagattta 240  Q
    |||||||||| |||||| ||||  ||| | |||||  ||||||||||||||| |||||| |||| |||||||||||| ||| ||  |||||||| |||||    
T  977 gtactccctcagtccctcaatacttgaacctatttggaaaaaatatttgtcccacaatacttgagcttctcagatttttaagcaggatttgacaaattta 1076  T
Q  241 ctccttataaataatttttgtggttcccatgttaaagtttgtaacggaacaa 292  Q
    | ||||||||||| ||||||||||  |||||| ||||||||||  |||||||    
T  1077 ccccttataaatactttttgtggtctccatgtaaaagtttgtagtggaacaa 1128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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