View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11097_high_1 (Length: 585)

Name: NF11097_high_1
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11097_high_1
NF11097_high_1
[»] chr4 (3 HSPs)
chr4 (21-456)||(2271847-2272282)
chr4 (484-565)||(2271763-2271841)
chr4 (402-514)||(32900416-32900528)
[»] scaffold0257 (1 HSPs)
scaffold0257 (38-530)||(22179-22676)
[»] chr7 (2 HSPs)
chr7 (322-500)||(41238400-41238578)
chr7 (193-502)||(23787248-23787557)
[»] chr5 (3 HSPs)
chr5 (402-516)||(12163090-12163204)
chr5 (157-332)||(12162860-12163034)
chr5 (413-492)||(40613957-40614036)
[»] chr3 (2 HSPs)
chr3 (375-492)||(30545748-30545865)
chr3 (456-504)||(9589706-9589754)
[»] chr1 (1 HSPs)
chr1 (468-519)||(27889087-27889138)
[»] chr2 (1 HSPs)
chr2 (401-497)||(10721711-10721807)


Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 21 - 456
Target Start/End: Complemental strand, 2272282 - 2271847
Alignment:
Q  21 gatggacatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg 120  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2272282 gatggccatcatcaggcgtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatg 2272183  T
Q  121 ctcaattttgtgttgtgggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtg 220  Q
    ||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||    
T  2272182 ctcaattttgtgttgcgggttgccaccaacatgagtctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcattttcttgtg 2272083  T
Q  221 gatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttaca 320  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||    
T  2272082 gatcgattttcctacagtttctcctgagaatttaacagaccatttagctcagtttgggagtttagttgatttatcgaaatcaaagaaatctctccttaca 2271983  T
Q  321 atgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgtta 420  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||  |||||||||||||||||||||||||||||||    
T  2271982 atgatttggtgcgctactacgtggatcatctcgaagaaaaggaacaacataatttttcaaaagagagaatcctccgcctctaagcttctcgataatgtta 2271883  T
Q  421 aatttctttctttttagtggttaaagacaaattcca 456  Q
    ||||||||||||||||||||||||||||||||||||    
T  2271882 aatttctttctttttagtggttaaagacaaattcca 2271847  T

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Target: chr4; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 484 - 565
Target Start/End: Complemental strand, 2271841 - 2271763
Alignment:
Q  484 gatggcttagccctttgttatatatgggcataggttcatagtctcttatctttgatttatgctcttttgtaactgatgatgt 565  Q
    |||| ||||||||||||||||||||||||||||||   | ||||||||| |||| |||||||||||||||||| ||||||||    
T  2271841 gatgacttagccctttgttatatatgggcataggt---tggtctcttatatttggtttatgctcttttgtaaccgatgatgt 2271763  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 402 - 514
Target Start/End: Original strand, 32900416 - 32900528
Alignment:
Q  402 aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt 501  Q
    |||||||| ||||||| |||  ||||||| || | ||||| |||  | || || |||| |||||||||||||||||||||| | |||||||||||||| |    
T  32900416 aagcttcttgataatggtaagcttctttcattctggtggtaaaaagctaactcaaaaaatattgcttttgattaccataggtggtggcttagccctttat 32900515  T
Q  502 tatatatgggcat 514  Q
     || |||||||||    
T  32900516 catgtatgggcat 32900528  T

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Target: scaffold0257 (Bit Score: 118; Significance: 6e-60; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 118; E-Value: 6e-60
Query Start/End: Original strand, 38 - 530
Target Start/End: Complemental strand, 22676 - 22179
Alignment:
Q  38 gtctctatttgtttggcgactactttggaacagatcaactaccaaaaataatttatacaggcgaatcattattcatccggatgctcaattttgtgttgtg 137  Q
    |||||| ||||||||| |||||||| | || ||||   |||| || || ||||||| || ||||   ||| |||||| |||||||||||||| ||| |||    
T  22676 gtctctgtttgtttggtgactacttcgaaatagattgcctacaaagaacaatttatgcaagcgaggaattcttcatcaggatgctcaattttatgtcgtg 22577  T
Q  138 ggttgccaccaacatgagcctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacag 237  Q
    ||||||  ||||||  || ||||| || |||| ||| | ||  || ||||||| | || |||||||||||   |||| |||||||| |  |||  |||||    
T  22576 ggttgcggccaacaaaagtctgcaaagcatctttttttacaacgtcctttgttcgatttcttatggagcgatgttttggtgtggattggatttattacag 22477  T
Q  238 tttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgcgctac 337  Q
    ||||||| ||||||  |||| | ||||||||| |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||||| ||||||||||    
T  22476 tttctcccgagaatgcaacaaatcatttagctcagtttgggagtttagctagtatatcgaaatcaaagagatctctcctcacattgattcggtgcgctac 22377  T
Q  338 tacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagct-----tctcgataatgttaaatttctttctt 432  Q
    | | |||| ||| | |||||||||||| |||||||||||||||| || || |||||| | ||| | | |     | |  ||||||||||| |||||||||    
T  22376 tgcatggaccatttggaaggaaaggaataacataatttttcaaaacaaaggctcctctgtctcaatgttttttctttttataatgttaaacttctttctt 22277  T
Q  433 tttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgttatatatgggcataggttcatagtctctt 530  Q
    ||| |||| ||||  ||||||||||||| ||  ||||||||||||| |  || ||||||||||||||||| | ||| || ||||||| ||||||||||    
T  22276 tttggtggctaaatgcaaattccaaaatcatgacttttgattaccaaatagggtggcttagccctttgttgtgtataggaataggttgatagtctctt 22179  T

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Target: chr7 (Bit Score: 75; Significance: 3e-34; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 322 - 500
Target Start/End: Complemental strand, 41238578 - 41238400
Alignment:
Q  322 tgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcctccgcctctaagcttctcgataatgttaa 421  Q
    |||||||||| |||  ||||||||  || | |||||||| |||||||||||| ||||||| || |||||||||||  ||||||||||| |||||||||||    
T  41238578 tgatttggtgtgcttgtacgtggactatttggaaggaaatgaacaacataatatttcaaaacaaagcctcctccgtttctaagcttctagataatgttaa 41238479  T
Q  422 atttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttg 500  Q
    | |||||||||||| || ||||||| |||| | ||||||||||| ||||||||| |||||| | ||||  |||||||||    
T  41238478 acttctttctttttggtagttaaaggcaaaatacaaaattattgtttttgattatcataggtggtggccaagccctttg 41238400  T

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Target: chr7; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 193 - 502
Target Start/End: Complemental strand, 23787557 - 23787248
Alignment:
Q  193 gttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaacagaccatttagctgagtttgggagtttagctagttt 292  Q
    |||||||||||| ||| |||||||||||||| || |||| | ||||||||||  | |||||| |||| ||||||  | |||||| ||||||||||||| |    
T  23787557 gttccttatggaacggtatttttgtgtggattgactttctttcagtttctccaaataatttatcagatcatttaattcagtttgagagtttagctagtat 23787458  T
Q  293 atcgaaatcaaagaaatctctccttacaatgatttggtgcgctactacgtggatcatctcgaaggaaaggaacaacataatttttcaaagcagagcctcc 392  Q
    ||||||||||||   ||||||| | ||| ||||||| || |||  ||||||||  || | |||| ||| ||| |  | ||| ||||||| || || ||||    
T  23787457 atcgaaatcaaaacgatctctcttcacattgatttgatgtgcttgtacgtggactatttggaagaaaatgaatagtagaatatttcaaaacaaagtctcc 23787358  T
Q  393 tccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta 492  Q
     |||| || |||||||| |||||| | ||  ||||||||||||  ||||||||| |||| || ||||||| || |||||||||  ||||| |||||| ||    
T  23787357 cccgcttcaaagcttctagataatataaagcttctttctttttgatggttaaaggcaaaatctaaaattactgtttttgattattataggtgatggccta 23787258  T
Q  493 gccctttgtt 502  Q
     | |||||||    
T  23787257 actctttgtt 23787248  T

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Target: chr5 (Bit Score: 63; Significance: 4e-27; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 402 - 516
Target Start/End: Original strand, 12163090 - 12163204
Alignment:
Q  402 aagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccctttgt 501  Q
    |||||| | |||||||||||  |||||||||||| ||||||||||||||||| ||||||||||||||||||||||  |||| | |||||||| | |||||    
T  12163090 aagcttattgataatgttaagcttctttctttttggtggttaaagacaaatttcaaaattattgcttttgattactgtaggtggtggcttagtcttttgt 12163189  T
Q  502 tatatatgggcatag 516  Q
    ||| |||||||||||    
T  12163190 tatgtatgggcatag 12163204  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 157 - 332
Target Start/End: Original strand, 12162860 - 12163034
Alignment:
Q  157 ctgcagagtatctatttcttcagtgttctttgttaggttccttatggagcggcatttttgtgtggatcgattttcctacagtttctcctgagaatttaac 256  Q
    |||||||| |||| ||||| ||||||  |||||| ||||||||||||||||   |||| |||||||||   |||| |||| | ||| | |||||| ||||    
T  12162860 ctgcagagcatctttttctacagtgtcttttgtttggttccttatggagcgatgttttggtgtggatcagatttcttacaatatcttcggagaatgtaac 12162959  T
Q  257 agaccatttagctgagtttgggagtttagctagtttatcgaaatcaaagaaatctctccttacaatgatttggtgc 332  Q
    ||| ||| || || | |||| |||||||||| || || | ||||| |||| ||||||||| ||| |||||| ||||    
T  12162960 agatcatctaactcaatttgagagtttagctggtata-caaaatctaagagatctctcctcacattgatttagtgc 12163034  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 413 - 492
Target Start/End: Original strand, 40613957 - 40614036
Alignment:
Q  413 taatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggctta 492  Q
    ||||||||| | ||||||||||| |||||||||| |||| |  |||||||||| | ||||||| |||||| | |||||||    
T  40613957 taatgttaagtgtctttctttttggtggttaaaggcaaaatttaaaattattgttcttgattatcataggtggtggctta 40614036  T

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Target: chr3 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 375 - 492
Target Start/End: Complemental strand, 30545865 - 30545748
Alignment:
Q  375 tttcaaagcagagcctcctccgcctctaagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgatt 474  Q
    ||||||| || ||||||||||  ||| |||| ||| |||||||||||  || ||||||||| ||||||||||  ||| || |||||||||| ||||||||    
T  30545865 tttcaaaacaaagcctcctccatctccaagcgtctagataatgttaatcttatttctttttggtggttaaagctaaaatctaaaattattgtttttgatt 30545766  T
Q  475 accataggggatggctta 492  Q
    | |||||| | |||||||    
T  30545765 atcataggtggtggctta 30545748  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 456 - 504
Target Start/End: Complemental strand, 9589754 - 9589706
Alignment:
Q  456 aaaattattgcttttgattaccataggggatggcttagccctttgttat 504  Q
    ||||||||| ||||||||||||||||| | || ||||||||||||||||    
T  9589754 aaaattattccttttgattaccataggtggtgtcttagccctttgttat 9589706  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 468 - 519
Target Start/End: Complemental strand, 27889138 - 27889087
Alignment:
Q  468 tttgattaccataggggatggcttagccctttgttatatatgggcataggtt 519  Q
    ||||||||||||||| |||| ||||||||||| || | ||||||||||||||    
T  27889138 tttgattaccataggtgatgacttagccctttattgtgtatgggcataggtt 27889087  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 401 - 497
Target Start/End: Original strand, 10721711 - 10721807
Alignment:
Q  401 taagcttctcgataatgttaaatttctttctttttagtggttaaagacaaattccaaaattattgcttttgattaccataggggatggcttagccct 497  Q
    ||||||| | ||||||||||| || |||||||| | ||||||||||||||| | || ||   |||||| ||| || |||||| | ||||||||||||    
T  10721711 taagcttttagataatgttaagttcctttctttctggtggttaaagacaaaattcacaaaccttgcttctgactatcataggtggtggcttagccct 10721807  T

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