View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11097_high_11 (Length: 351)
Name: NF11097_high_11
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11097_high_11 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
| [»] scaffold0002 (2 HSPs) |
| |
|
| [»] chr4 (1 HSPs) |
| |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] chr7 (1 HSPs) |
| |
|
| [»] scaffold0380 (1 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 165 - 351
Target Start/End: Complemental strand, 13219452 - 13219266
Alignment:
| Q |
165 |
tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttct |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13219452 |
tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacggcccaatctaccccccggaggaatatgtgcttct |
13219353 |
T |
|
| Q |
265 |
aaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13219352 |
aaaatatcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
13219266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 13217095 - 13217042
Alignment:
| Q |
298 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
13217095 |
ttagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatga |
13217042 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 111; Significance: 6e-56; HSPs: 2)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 165 - 351
Target Start/End: Original strand, 238257 - 238443
Alignment:
| Q |
165 |
tagagcaaggcctaattgaaaatgaattgaattattgattgtgtcataaagacccttatgtccacgccccaatctaccccccggaggaatatgtgcttct |
264 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| |||||||| |||||||| |||| ||||||||||||| |||| |||||| |
|
|
| T |
238257 |
tagagcaagacctaactgaaaatgaatcgaattgttgattgtgtcataaaggcccttatgcccacgccctaatcgaccccccggaggagtatgcgcttct |
238356 |
T |
|
| Q |
265 |
aaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||| ||||| |||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||| || |||||||||||||||| |
|
|
| T |
238357 |
aaaagatctttaatactgtgcccaattccgaagttagttcgatacatgtgaccggcaatgagaaaaataaatgcaatagctaaatga |
238443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 351
Target Start/End: Original strand, 240602 - 240667
Alignment:
| Q |
286 |
ccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||||||| |||| || |||||||||||||| || || || |||||||| ||||||||||||||| |
|
|
| T |
240602 |
ccaataccccagttggtcctatacatatgacctgcgattaggaaaagaatagcaatagctaaatga |
240667 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 262 - 351
Target Start/End: Original strand, 18176963 - 18177052
Alignment:
| Q |
262 |
tctaaaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||||||| ||| |||||| || |||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
18176963 |
tctaaaatatctcttataccatgaccaataccccaattagttctatacatatgaccggcaatgagaaaaagaattgcaatagctaaatga |
18177052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 39048001 - 39047948
Alignment:
| Q |
298 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||||||||||||||||||| | ||||||||||||||||||||||||||||||| |
|
|
| T |
39048001 |
ttagttctatacatatgaccggtaatgagaaaaagaattgcaatagctaaatga |
39047948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 266 - 351
Target Start/End: Original strand, 14541323 - 14541408
Alignment:
| Q |
266 |
aaatctcttttatactgtgcccaataccgaagttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
|||| |||||||||| || |||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
14541323 |
aaatatcttttataccatgaccaatatcccagttagttttatacatatgaccgacaatgagaaaaagaattgcaatagcaaaatga |
14541408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0380 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0380
Description:
Target: scaffold0380; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 298 - 351
Target Start/End: Complemental strand, 15723 - 15670
Alignment:
| Q |
298 |
ttagttctatacatatgaccagcaatgagaaaaagaattgcaatagctaaatga |
351 |
Q |
| |
|
||||||||||||||||||| |||||| ||||||||||||||||||||| |||| |
|
|
| T |
15723 |
ttagttctatacatatgactggcaatgtgaaaaagaattgcaatagctagatga |
15670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 165 - 196
Target Start/End: Complemental strand, 10996365 - 10996334
Alignment:
| Q |
165 |
tagagcaaggcctaattgaaaatgaattgaat |
196 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
10996365 |
tagagcaaggcctaattgaaaatgaattgaat |
10996334 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 20248705 - 20248673
Alignment:
| Q |
29 |
agaaggatggtgtatccagaagaaaaggtagac |
61 |
Q |
| |
|
|||||||||||||||||||| |||||||||||| |
|
|
| T |
20248705 |
agaaggatggtgtatccagaggaaaaggtagac |
20248673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University