View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11097_high_17 (Length: 311)
Name: NF11097_high_17
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11097_high_17 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 66; Significance: 4e-29; HSPs: 9)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39577595 - 39577660
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccacc |
66 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39577595 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccacc |
39577660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 253 - 310
Target Start/End: Complemental strand, 2268963 - 2268906
Alignment:
| Q |
253 |
gtttaagttacatgtatttgttcaaaccagaacaatcaactatcatacctaaagaaaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2268963 |
gtttaagttacatgtatttgttcaaaccagaacaatcaactatcatacctaaagaaaa |
2268906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 1 - 66
Target Start/End: Original strand, 39592072 - 39592137
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccacc |
66 |
Q |
| |
|
|||||||||||||| || ||||| |||||||||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
39592072 |
gttttacctgtcgttacacgttttctttgtcctccagaaatacctcttaacatttcatttcccacc |
39592137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39334828 - 39334764
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccac |
65 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
39334828 |
gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcatttcccac |
39334764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39346092 - 39346028
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccac |
65 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
39346092 |
gttttacctgttgtaaggcgtttcttttgtccgccagagatacctcttatcattgcatttcccac |
39346028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 39541732 - 39541792
Alignment:
| Q |
2 |
ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc |
62 |
Q |
| |
|
|||||||||| ||||| |||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
39541732 |
ttttacctgttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcatttcc |
39541792 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 62
Target Start/End: Original strand, 39567779 - 39567840
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc |
62 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
39567779 |
gttttacctgttgtaaggcgtttcttttgtccaccagagatacctcgtaacattgcatttcc |
39567840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 39360636 - 39360572
Alignment:
| Q |
1 |
gttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcccac |
65 |
Q |
| |
|
||||||||||| |||| |||||| ||||||| ||||||||| |||||| ||||||||||||||| |
|
|
| T |
39360636 |
gttttacctgttgtaaggcgtttcttttgtccgccagagatagctcttatcattgcatttcccac |
39360572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 62
Target Start/End: Original strand, 39550989 - 39551049
Alignment:
| Q |
2 |
ttttacctgtcgtaacccgtttcctttgtcctccagagatacctcttaacattgcatttcc |
62 |
Q |
| |
|
||||||| || ||||| |||||| ||||||| ||||||||||||| ||||||||||||||| |
|
|
| T |
39550989 |
ttttaccagttgtaacgcgtttcttttgtccaccagagatacctcgtaacattgcatttcc |
39551049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University