View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11097_high_18 (Length: 304)
Name: NF11097_high_18
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11097_high_18 |
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| [»] chr7 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 289; Significance: 1e-162; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 28889362 - 28889654
Alignment:
| Q |
12 |
atgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttcttta |
111 |
Q |
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| T |
28889362 |
atgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttcttta |
28889461 |
T |
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| Q |
112 |
ataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaagtttatgttatg |
211 |
Q |
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| T |
28889462 |
ataagggtgaagtaatatccttttgatcattattatcctaatagtgttcttatattctagaaatgaagtgacacccttttgatcaaaagtttatgttatg |
28889561 |
T |
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| Q |
212 |
tatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
304 |
Q |
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| T |
28889562 |
tatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaaca |
28889654 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 12 - 304
Target Start/End: Original strand, 36017537 - 36017837
Alignment:
| Q |
12 |
atgaataacaatattggaaacttaagcattgatgaaggtgttgaaactcctttaatgttggcactatggtcaaataatggtccttctggttgtttcttta |
111 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
36017537 |
atgaataacaatattggaaatttaagcattgatgaaggtgttgaaactcctttaatgttggcactattgtcaaataatggtccttctggttgtttcttta |
36017636 |
T |
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| Q |
112 |
ataagggtgaagtaatatccttttgatcatta--------ttatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaagttt |
203 |
Q |
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| T |
36017637 |
ctaagggtgaagtaatacccttttgatcattatttgattattatcctaatagtgttcttctattctagaaatgaagtgacacccttttgatcaaaggtat |
36017736 |
T |
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| Q |
204 |
atgttatgtatccaagagaatgaataataggccatattcatgttaggaaatcaagtttgaacctagcacaacaaaaataaaatggcacattgatgggaac |
303 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||||||||| |
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| T |
36017737 |
atgttatgtattcaagagaatgaataataggccatattcatgttaggaaatcaaatttgaacctagcacaagaaaaataaagtggcacattgatgggaac |
36017836 |
T |
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| Q |
304 |
a |
304 |
Q |
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| T |
36017837 |
a |
36017837 |
T |
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