View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11097_high_3 (Length: 525)
Name: NF11097_high_3
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11097_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 292; Significance: 1e-164; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 292; E-Value: 1e-164
Query Start/End: Original strand, 147 - 494
Target Start/End: Original strand, 34675014 - 34675366
Alignment:
| Q |
147 |
ttagatctgatatt---tatttgtgaccattgagttttgtaataacttttgaaactaaaactgattattacttgaaaacacgatgta--gaagggaaagt |
241 |
Q |
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| T |
34675014 |
ttagatctgatattctttatttgtgaccattgagttttgtaataacttttgaaactaaa-ctgattattacttgaaaacacgatgtatagaagggaaagt |
34675112 |
T |
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| Q |
242 |
tagaagataaatagattcatattttgtatgactcaatannnnnnn-attgctttgtagcgcaggagaaaaaatggcatcatcaagctcatacaattcacc |
340 |
Q |
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| T |
34675113 |
tagaagataaatagattcatattttgtatgactcaatattttttttattgctttgtagcgcaggagaaaaaatggcatcatcaagctcatacaattcacc |
34675212 |
T |
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| Q |
341 |
atgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcac |
440 |
Q |
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| T |
34675213 |
atgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcac |
34675312 |
T |
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| Q |
441 |
aagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcac |
494 |
Q |
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| T |
34675313 |
aagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcac |
34675366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 80; Significance: 3e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 308 - 494
Target Start/End: Original strand, 43583166 - 43583355
Alignment:
| Q |
308 |
aaaaatggcatcatca---agctcatacaattcaccatgtgcagcctgcaaattccttcgtcgaaaatgcatgccaggctgcatctttgcaccatacttt |
404 |
Q |
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| T |
43583166 |
aaaaatggcatcatcatccagctcatacaattcaccttgtgctgcctgcaaattcttgaggagaaaatgcatgccaggatgcatctttgcaccttacttc |
43583265 |
T |
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| Q |
405 |
ccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaacgtcacaaagatcctcaacgaactcctccctcac |
494 |
Q |
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| T |
43583266 |
cctccagaagagcctcaaaaatttgcaaacgtgcacaaaatatttggtgctagcaatgtcacaaagcttctcaatgaacttctccctcac |
43583355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 372 - 460
Target Start/End: Complemental strand, 12360861 - 12360773
Alignment:
| Q |
372 |
tgcatgccaggctgcatctttgcaccatactttccaccggaagaacctcaaaaatttgcaaacgttcacaagatcttcggcgcaagcaa |
460 |
Q |
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| T |
12360861 |
tgcatgccagattgcatatttgctccatatttcccaccagaagaaccacaaaaatttgcaaatgttcacaaaatatttggtgcaagcaa |
12360773 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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