View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11097_low_1 (Length: 512)

Name: NF11097_low_1
Description: NF11097
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11097_low_1
NF11097_low_1
[»] chr5 (8 HSPs)
chr5 (16-364)||(10289807-10290155)
chr5 (16-352)||(9747370-9747700)
chr5 (371-509)||(10290210-10290346)
chr5 (81-361)||(10298010-10298270)
chr5 (430-509)||(10298669-10298746)
chr5 (371-487)||(9747055-9747171)
chr5 (371-429)||(10298467-10298525)
chr5 (16-62)||(10297960-10298005)
[»] chr2 (2 HSPs)
chr2 (40-352)||(34694209-34694519)
chr2 (40-352)||(34716621-34716931)
[»] chr8 (1 HSPs)
chr8 (38-352)||(37743885-37744192)


Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 16 - 364
Target Start/End: Original strand, 10289807 - 10290155
Alignment:
Q  16 aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10289807 aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc 10289906  T
Q  116 tgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtct 215  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  10289907 tgatgtctttgaaaactttgtggcacaacagtattgtttcttgctgacagatcaggagtttgatattggacttaaatattcgattcgcctccaaaagtct 10290006  T
Q  216 tcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca 315  Q
    ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290007 tcatgaacactgctgcacacatatgcaggactaggaggtacctcggtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca 10290106  T
Q  316 cctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta 364  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290107 cctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaatagta 10290155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 16 - 352
Target Start/End: Complemental strand, 9747700 - 9747370
Alignment:
Q  16 aataaaacaacattaaccacctttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatc 115  Q
    ||||||||||||||||||  ||||| ||| |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||| |||||| |    
T  9747700 aataaaacaacattaaccggctttt-cttaaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattctatcgtaccatttagaccagagc 9747602  T
Q  116 tgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtct 215  Q
    ||||||||  |||||||| |||||||| ||||||| | |||||  |||| ||| |||||| ||||||||||||||||||||| |||||||||||||||||    
T  9747601 tgatgtctcggaaaactt-gtggcacagcagtatcatctcttgaggacaaatcaggagtt-gatattggacttaaatattcggttcgcctccaaaagtct 9747504  T
Q  216 tcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaaca 315  Q
    ||| | ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||   |||||||||      
T  9747503 tcatggacactgctgcacacagatgcaggactaggaggtacctcagtgtagttctcctaaagagcatatagcagaaaatcaaatgattttttatacaa-- 9747406  T
Q  316 cctctgtatgaaatataaaggtcatcatggtcaacag 352  Q
     ||||| |||||||||||||||| |||||| ||||||    
T  9747405 -ctctgaatgaaatataaaggtcgtcatgggcaacag 9747370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 371 - 509
Target Start/End: Original strand, 10290210 - 10290346
Alignment:
Q  371 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 470  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290210 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 10290309  T
Q  471 taagaactgttggaccattttgatgtccatctcattgtc 509  Q
    |||||||||||||| ||||||||||||  ||||||||||    
T  10290310 taagaactgttggagcattttgatgtc--tctcattgtc 10290346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 81 - 361
Target Start/End: Original strand, 10298010 - 10298270
Alignment:
Q  81 acttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggcacaacagtatcgtttcttgctgacagatcgggagtttgata 180  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||||||||| |||||||||||||||||| ||||| ||||| ||                 
T  10298010 acttaagaattttattgtaccatttaaaccagagctgatgtctctgaaaactt-gtggcacaacagtatcgtctcttgatgacaaat------------- 10298095  T
Q  181 ttggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacatatgcaggactaggaggtacctcagtgtagttctcctaaagagc 280  Q
     |||| ||||| |||||||||||||||| ||||||||| ||||||||||||||||||  || |||||||||||||||||||||||||||||| |||||||    
T  10298096 -tggatttaaacattcgattcgcctccagaagtcttcatgaacactgctgcacacat--gctggactaggaggtacctcagtgtagttctccaaaagagc 10298192  T
Q  281 atgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggtcatcatggtcaacaggcaaaaata 361  Q
    || ||||||||||||||||||   ||||||||||   | |||  |||||| |||||||||||| ||||||||| |||||||    
T  10298193 atatagcagaaaatcaaatgattttttatacaac---tttgttcgaaataaaaaggtcatcatagtcaacaggtaaaaata 10298270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 430 - 509
Target Start/End: Original strand, 10298669 - 10298746
Alignment:
Q  430 ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtccatctcattgtc 509  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||    
T  10298669 ggagtatgatgcacttacatgtctctcaccaccgtcgttcataagaactgttggaccattttgatgtc--tctcattgtc 10298746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 371 - 487
Target Start/End: Complemental strand, 9747171 - 9747055
Alignment:
Q  371 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggagggagtatgatgcacttacatgtctctcaccaccgtcgttca 470  Q
    ||||| ||||||||||||||| |||||||  ||   || |||||||||||| | |||||||||||||||| |||||||||||||||||||||||||||||    
T  9747171 aataagtatgaacgaattcttctgcagaaatgagggttgaaaaggaatgagtaatggagggagtatgatgaacttacatgtctctcaccaccgtcgttca 9747072  T
Q  471 taagaactgttggacca 487  Q
     ||| ||||||||||||    
T  9747071 caaggactgttggacca 9747055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 371 - 429
Target Start/End: Original strand, 10298467 - 10298525
Alignment:
Q  371 aataaatatgaacgaattcttatgcagaagcgacatttaaaaaggaatgaggattggag 429  Q
    |||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||    
T  10298467 aataaatatgaaagaattcttctgcagaagcgacacttaaaaaggaatgaggattggag 10298525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 16 - 62
Target Start/End: Original strand, 10297960 - 10298005
Alignment:
Q  16 aataaaacaacattaaccacctttttcttgaatcaaaactatggtat 62  Q
    |||||||||||||||||| ||||||| ||| ||||||||||||||||    
T  10297960 aataaaacaacattaaccgccttttt-ttgtatcaaaactatggtat 10298005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 122; Significance: 2e-62; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 40 - 352
Target Start/End: Original strand, 34694209 - 34694519
Alignment:
Q  40 ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||  |||||||||||||||| |||||||||  ||||   |||||||    
T  34694209 ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc 34694306  T
Q  140 acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- 236  Q
    ||| ||||||| | ||  |  |||| ||| |||||| ||||||||| ||||||||||  || ||||||||||||||||| ||||||||||||| |||       
T  34694307 acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat 34694403  T
Q  237 -tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag 335  Q
      |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| |||    
T  34694404 gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag 34694502  T
Q  336 gtcatcatggtcaacag 352  Q
    |||||||||||||||||    
T  34694503 gtcatcatggtcaacag 34694519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 40 - 352
Target Start/End: Original strand, 34716621 - 34716931
Alignment:
Q  40 ttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtggc 139  Q
    |||||||||||||||||| |||||||||||||||||||||||||||| |||| |||  |||||||||||||||| |||||||||  ||||   |||||||    
T  34716621 ttcttgaatcaaaactatagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagctgatgtctcggaaac--ttgtggc 34716718  T
Q  140 acaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacaca--- 236  Q
    ||| ||||||| | ||  |  |||| ||| |||||| ||||||||| ||||||||||  || ||||||||||||||||| ||||||||||||| |||       
T  34716719 acagcagtatcatctcgag--gacaaatcaggagtt-gatattggaattaaatattcagttggcctccaaaagtcttcatgaacactgctgcatacagat 34716815  T
Q  237 -tatgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaag 335  Q
      |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| |||    
T  34716816 gcatgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaag 34716914  T
Q  336 gtcatcatggtcaacag 352  Q
    |||||||||||||||||    
T  34716915 gtcatcatggtcaacag 34716931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 110; Significance: 3e-55; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 38 - 352
Target Start/End: Complemental strand, 37744192 - 37743885
Alignment:
Q  38 ttttcttgaatcaaaactatggtatcattgctcaatgcttgaaacttaagaattttattgtaccatttaaaccagatctgatgtctttgaaaactttgtg 137  Q
    ||||||| |||||||||||  |||||||||||||||||||||||||||| |||| |||  ||||||||||||||||  |||| |||  ||||   |||||    
T  37744192 ttttcttaaatcaaaactaaagtatcattgctcaatgcttgaaacttaaaaattctatcctaccatttaaaccagagttgatttctcggaaac--ttgtg 37744095  T
Q  138 gcacaacagtatcgtttcttgctgacagatcgggagtttgatattggacttaaatattcgattcgcctccaaaagtcttcaagaacactgctgcacacat 237  Q
    ||||||||||||| | ||  |   ||| ||| |||||| |||||| || ||||||||||  || ||||| ||||||||||| ||||| ||||||| |||     
T  37744094 gcacaacagtatcatctcggg---acaaatcaggagtt-gatatttgaattaaatattcagttggcctctaaaagtcttcatgaacattgctgcatacag 37743999  T
Q  238 atgcaggactaggaggtacctcagtgtagttctcctaaagagcatgtagcagaaaatcaaatgaccgtttatacaacacctctgtatgaaatataaaggt 337  Q
    |||||| ||||||||||||||||||||||||||||||||||||||  |||||||||||||||||   ||| |   ||| ||||| ||||||||| |||||    
T  37743998 atgcagtactaggaggtacctcagtgtagttctcctaaagagcataaagcagaaaatcaaatga-tttttttcttacaactctgaatgaaatatgaaggt 37743900  T
Q  338 catcatggtcaacag 352  Q
    |||||||||||||||    
T  37743899 catcatggtcaacag 37743885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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