View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11098_high_11 (Length: 252)
Name: NF11098_high_11
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_high_11 |
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Alignment Details
Target: chr1 (Bit Score: 179; Significance: 1e-96; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 21653362 - 21653141
Alignment:
| Q |
1 |
tttttcctttttactccatgtagaacacgtaaataatctgccgcacagctttacttatgcacctgctaacactattacgtctacaaacttgggtctaaaa |
100 |
Q |
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| T |
21653362 |
tttttcctttttactccatgtagaacacgtaaataatctgccgcatagctttatttatgcacctgctaacactattacgtctacaaacttgggtctaaaa |
21653263 |
T |
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| Q |
101 |
acttattatatttgtttaaattttctatatatatgtactcattaatatcaacctttttacgtctacaaacccacaacacatcctccaaacatacaaaaaa |
200 |
Q |
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| T |
21653262 |
acttattatatttgtttaaattttctatatatatg-------------caacctttttacgtctacaaacccacaatacatcctccaaacatacaaaaaa |
21653176 |
T |
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| Q |
201 |
gaaaatgtatgctcaaaaccttgtgattttaaaag |
235 |
Q |
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| T |
21653175 |
gaaaatgtatgctcaaaaccttgtgattttaaaag |
21653141 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 98 - 235
Target Start/End: Complemental strand, 23241512 - 23241374
Alignment:
| Q |
98 |
aaaacttattatatttgtttaaattttctatatatatgtactcattaatatcaacctttttacgtctacaaacccacaacacatcctccaaacatacaaa |
197 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
23241512 |
aaaacttattatatttgtttaaattttcaatatatatgtactcattaatatcaacctttttacgtctacaaacccacaatacatcctccaaacatacaaa |
23241413 |
T |
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| Q |
198 |
aaa-gaaaatgtatgctcaaaaccttgtgattttaaaag |
235 |
Q |
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| T |
23241412 |
aaacgaaaatgtctgctcaaaaccttatgattttaaaag |
23241374 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 53
Target Start/End: Complemental strand, 23241575 - 23241523
Alignment:
| Q |
1 |
tttttcctttttactccatgtagaacacgtaaataatctgccgcacagcttta |
53 |
Q |
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||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
23241575 |
tttttcctttttactccatgtagaacacgcaaataatctgccgcacagcttta |
23241523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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