View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11098_low_1 (Length: 637)
Name: NF11098_low_1
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 473; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 473; E-Value: 0
Query Start/End: Original strand, 20 - 620
Target Start/End: Original strand, 33187345 - 33187945
Alignment:
| Q |
20 |
attcaaagaccaaaataatcattaccacttaaatttttaccatcaaccaacaaattgggtcttacagaatgagttagactccataatgtggtaaattaat |
119 |
Q |
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| T |
33187345 |
attcaaagaccaaaataatcattaccacttaaatttttaccatcaaccaacaaattgggtcttacataatgagttagactccataatgtggtaaattaat |
33187444 |
T |
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| Q |
120 |
gttcaaattagggttacacgatatatccacatttaacatctaacattgtcttgtattacctccaataaagagaatctttgaaaaactaagaaaaatggac |
219 |
Q |
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| T |
33187445 |
gttcaaattagggttacacgatatatccacatttagcatctgacattgtcttgtattacctccaataaagagaacctttgaaaaactaagaaaaatggac |
33187544 |
T |
|
| Q |
220 |
ttgcaagatatgcatctctcctcaattgatcaaattagtaacatgtgaacatctcactcgactaacacaccttttttctctttcttgaatgaattgttct |
319 |
Q |
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| T |
33187545 |
ttgcaagatatgcatctctcctcaattgatcaaattagtaacatgtgaacatctcactcgactaacacaccttttttctctttcttgaatgaattgttct |
33187644 |
T |
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| Q |
320 |
atgactgctccttagaaagttaattcgtatagatcattgcaaatttttagggttattttgccaaaagagaagaggaacaaaatcaaggaggaaagagtga |
419 |
Q |
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| T |
33187645 |
atgagtgctccttagaaagttaattcgttttgatcattgcaaatttttagggttattttgcctaaagagaagaggaacaaaatcaaggaggaaagagtga |
33187744 |
T |
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| Q |
420 |
aaataactagcatcaagatgtannnnnnnnnnnnnnnnnaaaaaaggaggaaaaataacctgctttaagacgataatatttnnnnnnngatcccaattaa |
519 |
Q |
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| T |
33187745 |
aaataactagcatcaagatgtattttatttttattttttaaaaaaggaggaaaaataacctgctttgagacgataatctttaacaaaagatcccaatgaa |
33187844 |
T |
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| Q |
520 |
tcctatactaacgaaagtcatgtcaataaacatagattttgacataactcaataccaacggaaacatatacagttagaaccggtatattgttgtatgatt |
619 |
Q |
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|||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
33187845 |
tcctatactaacgaaactcatgtcaataaacataggttttgacataactcaataccaacggaaacatatatagttagaaccggtatattgttgtatgatt |
33187944 |
T |
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| Q |
620 |
t |
620 |
Q |
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| T |
33187945 |
t |
33187945 |
T |
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