View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11098_low_10 (Length: 254)
Name: NF11098_low_10
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_10 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 244
Target Start/End: Original strand, 21653399 - 21653642
Alignment:
| Q |
1 |
aatagatgcaggtatagtatacaaaataggaaaaataacaatgagaagtactaaaatcgtcatttctcaaagctggtaacaacaattaaataaaattaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21653399 |
aatagatgcaggtatagtatacaaaataggaaaaataacaatgagaagtactaaaatcatcatttctcaaagctggtaacaacaattaaataaaattaaa |
21653498 |
T |
|
| Q |
101 |
atccacaagacttacaagtgcattcttcgtccagttggttatatttaattgtgtaatgaattacaggtcatcggttcaaatcttgagtggttacaagttt |
200 |
Q |
| |
|
||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |
|
|
| T |
21653499 |
atctacaagacttacaagtgcattcttcgtccaattgattatatttaattgtgtaatgaattacaggtcaccggttcaaattttgagtggttacaagttt |
21653598 |
T |
|
| Q |
201 |
gttagtggtattttttgccagnnnnnnnaatactcatcttcttc |
244 |
Q |
| |
|
|||||| |||||||||||||| |||||||||||||||| |
|
|
| T |
21653599 |
gttagtagtattttttgccagtttttttaatactcatcttcttc |
21653642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 158
Target Start/End: Original strand, 50723567 - 50723704
Alignment:
| Q |
23 |
aaaataggaaaaataacaatgagaa-gtactaaa-atcgtcatttctcaaagctggtaacaacaattaaataaaattaaaatccacaagacttacaagtg |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| || | |||||||||| | |||||||||| ||||||| ||||||||||||||| | | | ||||| |
|
|
| T |
50723567 |
aaaataggaaaaataacaatgagaaagtaataaacattattatttctcaaaacaggtaacaacagttaaatataattaaaatccacaaaaatcataagtg |
50723666 |
T |
|
| Q |
121 |
cattcttcgtccagttggttatatttaattgtgtaatg |
158 |
Q |
| |
|
||| ||| || |||||| |||||||||||||||||| |
|
|
| T |
50723667 |
catgcttggtattgttggtgatatttaattgtgtaatg |
50723704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 50789282 - 50789145
Alignment:
| Q |
23 |
aaaataggaaaaataacaatgagaa-gtactaaa-atcgtcatttctcaaagctggtaacaacaattaaataaaattaaaatccacaagacttacaagtg |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| || | |||||||||| | |||||||||| ||||||| ||||||||||||||| | | | ||||| |
|
|
| T |
50789282 |
aaaataggaaaaataacaatgagaaagtaataaacattattatttctcaaaacaggtaacaacagttaaatataattaaaatccacaaaaatcataagtg |
50789183 |
T |
|
| Q |
121 |
cattcttcgtccagttggttatatttaattgtgtaatg |
158 |
Q |
| |
|
||| ||| || |||||| |||||||||||||||||| |
|
|
| T |
50789182 |
catgcttggtattgttggtgatatttaattgtgtaatg |
50789145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 23 - 158
Target Start/End: Complemental strand, 21349023 - 21348886
Alignment:
| Q |
23 |
aaaataggaaaaataacaatgagaa-gtactaaa-atcgtcatttctcaaagctggtaacaacaattaaataaaattaaaatccacaagacttacaagtg |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||| |||| || | |||||||||| | ||||||||||||| |||| |||||||||||| || | | | ||||| |
|
|
| T |
21349023 |
aaaataggaaaaataacaatgagaaagtattaaacattattatttctcaaaacaggtaacaacaattcaatataattaaaatccataaaaatcataagtg |
21348924 |
T |
|
| Q |
121 |
cattcttcgtccagttggttatatttaattgtgtaatg |
158 |
Q |
| |
|
||| || || || ||||| |||||||||||||||||| |
|
|
| T |
21348923 |
catgtttggtacaattggtgatatttaattgtgtaatg |
21348886 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 67 - 105
Target Start/End: Complemental strand, 43260576 - 43260538
Alignment:
| Q |
67 |
tcaaagctggtaacaacaattaaataaaattaaaatcca |
105 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43260576 |
tcaaaactggtaacaacaattaaataaaattaaaatcca |
43260538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 74 - 123
Target Start/End: Original strand, 45482365 - 45482414
Alignment:
| Q |
74 |
tggtaacaacaattaaataaaattaaaatccacaagacttacaagtgcat |
123 |
Q |
| |
|
|||||||||||||||||||||||||||| || || | |||||||||||| |
|
|
| T |
45482365 |
tggtaacaacaattaaataaaattaaaacccttaaaatttacaagtgcat |
45482414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University