View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11098_low_16 (Length: 237)

Name: NF11098_low_16
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11098_low_16
NF11098_low_16
[»] chr4 (17 HSPs)
chr4 (107-222)||(5370714-5370829)
chr4 (39-222)||(2253835-2254012)
chr4 (39-98)||(12912608-12912667)
chr4 (39-93)||(48806260-48806314)
chr4 (39-99)||(33150618-33150679)
chr4 (39-90)||(46518502-46518553)
chr4 (39-98)||(53176307-53176366)
chr4 (39-96)||(2582809-2582866)
chr4 (39-86)||(24798209-24798256)
chr4 (61-90)||(26909671-26909700)
chr4 (39-92)||(32599562-32599615)
chr4 (39-92)||(38949687-38949740)
chr4 (39-95)||(4406243-4406299)
chr4 (62-98)||(6170870-6170906)
chr4 (39-91)||(38539484-38539536)
chr4 (39-91)||(43616227-43616279)
chr4 (39-99)||(44171432-44171492)
[»] chr5 (13 HSPs)
chr5 (111-222)||(20454185-20454299)
chr5 (39-99)||(25792928-25792988)
chr5 (39-98)||(13356219-13356278)
chr5 (39-86)||(33075147-33075194)
chr5 (42-99)||(4738318-4738375)
chr5 (39-92)||(13710372-13710425)
chr5 (44-96)||(7613359-7613411)
chr5 (39-99)||(8717716-8717776)
chr5 (39-99)||(8717789-8717849)
chr5 (39-99)||(13654507-13654567)
chr5 (39-99)||(25694197-25694257)
chr5 (39-75)||(34820647-34820683)
chr5 (39-95)||(36864443-36864499)
[»] chr1 (18 HSPs)
chr1 (42-93)||(1597274-1597325)
chr1 (42-93)||(1751109-1751160)
chr1 (39-86)||(48083515-48083562)
chr1 (39-93)||(9902572-9902626)
chr1 (39-97)||(27864501-27864559)
chr1 (39-85)||(35544615-35544661)
chr1 (39-92)||(3549861-3549914)
chr1 (39-80)||(13877002-13877043)
chr1 (42-95)||(46412705-46412758)
chr1 (43-84)||(48129513-48129554)
chr1 (39-96)||(50308710-50308767)
chr1 (42-90)||(6340655-6340703)
chr1 (39-99)||(9675964-9676024)
chr1 (39-99)||(10256851-10256910)
chr1 (54-102)||(27687942-27687990)
chr1 (43-99)||(29043452-29043508)
chr1 (39-99)||(39940568-39940628)
chr1 (39-83)||(41007691-41007735)
[»] chr8 (14 HSPs)
chr8 (39-99)||(17986192-17986252)
chr8 (39-90)||(26998751-26998802)
chr8 (39-96)||(17986276-17986333)
chr8 (39-96)||(27502902-27502959)
chr8 (39-99)||(17871761-17871821)
chr8 (39-90)||(14041874-14041925)
chr8 (39-86)||(17871845-17871892)
chr8 (39-86)||(26998680-26998727)
chr8 (39-97)||(37288556-37288615)
chr8 (39-97)||(1897858-1897916)
chr8 (39-92)||(18603540-18603593)
chr8 (37-86)||(31271543-31271592)
chr8 (39-91)||(3225862-3225914)
chr8 (39-75)||(36308536-36308572)
[»] chr6 (8 HSPs)
chr6 (43-90)||(17214202-17214249)
chr6 (39-98)||(32254903-32254962)
chr6 (39-97)||(10258386-10258444)
chr6 (39-97)||(29419869-29419927)
chr6 (45-98)||(12383786-12383839)
chr6 (39-100)||(24111181-24111242)
chr6 (39-95)||(8449576-8449632)
chr6 (39-95)||(8458380-8458436)
[»] chr7 (5 HSPs)
chr7 (45-98)||(21096186-21096239)
chr7 (39-86)||(30457742-30457789)
chr7 (39-96)||(11602769-11602826)
chr7 (39-88)||(28752088-28752137)
chr7 (42-86)||(28752164-28752208)
[»] chr3 (10 HSPs)
chr3 (39-96)||(36571456-36571513)
chr3 (39-99)||(34327590-34327650)
chr3 (39-98)||(40639791-40639850)
chr3 (39-97)||(33371865-33371923)
chr3 (39-93)||(40639877-40639931)
chr3 (45-95)||(48545631-48545681)
chr3 (41-98)||(8256908-8256965)
chr3 (42-90)||(24270460-24270508)
chr3 (54-98)||(35511768-35511812)
chr3 (51-87)||(40169094-40169130)
[»] chr2 (15 HSPs)
chr2 (39-99)||(7650188-7650248)
chr2 (39-99)||(23143568-23143628)
chr2 (39-99)||(23555358-23555418)
chr2 (39-86)||(15446860-15446907)
chr2 (39-98)||(23378024-23378083)
chr2 (39-97)||(11093530-11093588)
chr2 (39-93)||(45472414-45472468)
chr2 (39-97)||(45473077-45473135)
chr2 (41-94)||(6648171-6648224)
chr2 (45-98)||(26229533-26229586)
chr2 (39-99)||(5559427-5559487)
chr2 (39-95)||(8266315-8266371)
chr2 (25-97)||(32226576-32226648)
chr2 (39-75)||(32514950-32514986)
chr2 (39-99)||(41824342-41824402)
[»] scaffold0149 (1 HSPs)
scaffold0149 (39-98)||(24688-24747)


Alignment Details
Target: chr4 (Bit Score: 108; Significance: 2e-54; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 107 - 222
Target Start/End: Complemental strand, 5370829 - 5370714
Alignment:
Q  107 gtacttttgttcggtgcagatgtcttaatggaagcatgcgttgtgttgaggtaatcagctgcagattaaacaaactataattttctcgacttcacataat 206  Q
    |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5370829 gtacttttgttcagtgcggatgtcttaatggaagcatgcgttgtgttgaggtaatcagctgcagattaaacaaactataattttctcgacttcacataat 5370730  T
Q  207 cactactataattcat 222  Q
    ||||||||||||||||    
T  5370729 cactactataattcat 5370714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 39 - 222
Target Start/End: Complemental strand, 2254012 - 2253835
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagggataaatatgtacttttgttcggtgcagatgtcttaatgga 138  Q
    ||||||||||||||||||||  ||||||||||||||||  |||||||||||||||||||||  ||||||||||||||||| |||| ||||||||||||||    
T  2254012 tacatcatttaatgaataaatctaaaaaattaatttttgtttataataatgatcggagggagtaatatgtacttttgttcagtgcggatgtcttaatgga 2253913  T
Q  139 agcatgcgttgtgttgaggtaatcagctgcagattaaacaaactataattttctcgacttcacataatcactactataattcat 222  Q
           ||  | | ||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  2253912 ------ggtaatctggaggtaatcagatgcagattaaacaaactataattttctcgacttcatataatcactactataattcat 2253835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 12912667 - 12912608
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||||||  |||||  |||||||||||||||||||||||||| ||||    
T  12912667 tacatcatttaatgaataaatctaaaatgttaatttttacttataataatgatcgaaggg 12912608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 48806314 - 48806260
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    ||||||||||| |||||||||||||||  |||| |||||||||||||||||||||    
T  48806314 tacatcatttattgaataaacttaaaatgttaaattttacttataataatgatcg 48806260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 33150618 - 33150679
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaatta-atttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||||||||||||||||||  ||||||||||||| | |||| |||||||    
T  33150618 tacatcatttaatgaataaacttaaaaaattatttttttacttataacagtgattggaggga 33150679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 46518502 - 46518553
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    ||||||||||| ||||||||| |||||| ||||||||| |||||||||||||    
T  46518502 tacatcatttattgaataaacctaaaaagttaatttttgcttataataatga 46518553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 39 - 98
Target Start/End: Complemental strand, 53176366 - 53176307
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||| ||  |||||  ||||||||||||||||||| |||||||||||    
T  53176366 tacatcatttaatgaatgaatataaaatgttaatttttacttataatagtgatcggaggg 53176307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 2582866 - 2582809
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||||||||||||||| ||  ||||| ||| |||||| |||||||||||||||||||    
T  2582866 tacatcatttaatgaatcaatctaaaatattgatttttgcttataataatgatcggag 2582809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 24798209 - 24798256
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||||||| || |||||| |||||||||| |||||||||    
T  24798209 tacatcatttaatgaatgaatttaaaatattaatttttgcttataata 24798256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 61 - 90
Target Start/End: Complemental strand, 26909700 - 26909671
Alignment:
Q  61 taaaaaattaatttttacttataataatga 90  Q
    ||||||||||||||||||||||||||||||    
T  26909700 taaaaaattaatttttacttataataatga 26909671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 32599562 - 32599615
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatc 92  Q
    ||||||||||||| ||| ||  ||||| |||||||||||||||||||| |||||    
T  32599562 tacatcatttaataaatgaatctaaaatattaatttttacttataatagtgatc 32599615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Complemental strand, 38949740 - 38949687
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatc 92  Q
    ||||||||||| ||||| || |||||| ||||||||||  ||||||||||||||    
T  38949740 tacatcatttattgaattaatttaaaatattaattttttattataataatgatc 38949687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 4406299 - 4406243
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    ||||||||||||||||||||  |||||  || |||||||||||||||| ||| ||||    
T  4406299 tacatcatttaatgaataaatctaaaatgttgatttttacttataatagtgaccgga 4406243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 62 - 98
Target Start/End: Complemental strand, 6170906 - 6170870
Alignment:
Q  62 aaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||||||||||| ||||| |||||    
T  6170906 aaaaaattaatttttacttataatagtgatcagaggg 6170870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 38539536 - 38539484
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgat 91  Q
    ||||||||||| |||||||| |||||| || ||||||| ||||||||| ||||    
T  38539536 tacatcatttattgaataaatttaaaatataaatttttgcttataatagtgat 38539484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 43616227 - 43616279
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgat 91  Q
    ||||||||||||| ||| || |||||||||| |||||| ||||||||| ||||    
T  43616227 tacatcatttaataaatgaatttaaaaaattgatttttgcttataatagtgat 43616279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 44171492 - 44171432
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||| || |||||||||||| ||||  |||||||||| | ||||||||    
T  44171492 tacatcatttattgaatgaatttaaaaaattaacttttgtttataataataaccggaggga 44171432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 8e-48; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 111 - 222
Target Start/End: Complemental strand, 20454299 - 20454185
Alignment:
Q  111 ttttgttcggtgcagatgtcttaatggaagcatgcgttgtgttg---aggtaatcagctgcagattaaacaaactataattttctcgacttcacataatc 207  Q
    ||||||||||||| ||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20454299 ttttgttcggtgcggatgtcttaatggaagcatgcgttgtgttgttgaggtaatcagctgcagattaaacaaactataattttctcgacttcacataatc 20454200  T
Q  208 actactataattcat 222  Q
    |||||||||||||||    
T  20454199 actactataattcat 20454185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 25792928 - 25792988
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| ||| |||||| | ||||||| ||||||||| ||| ||||||||    
T  25792928 tacatcatttaatgaatgaacctaaaaagtaaatttttgcttataatagtgaccggaggga 25792988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 13356219 - 13356278
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||| ||||| |||||||||| |  |||||| ||||||||||||| |||||||    
T  13356219 tacatcatttattgaatgaacttaaaaagtagatttttgcttataataatgaccggaggg 13356278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 33075147 - 33075194
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||||||| ||| ||||| |||||||||| |||||||||    
T  33075147 tacatcatttaatgaatgaacctaaaatattaatttttgcttataata 33075194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 99
Target Start/End: Original strand, 4738318 - 4738375
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    |||||||| ||| | ||| ||||||||||||||||  |||||||| ||||||||||||    
T  4738318 atcatttattgattgaacctaaaaaattaatttttgtttataatagtgatcggaggga 4738375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 13710372 - 13710425
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatc 92  Q
    ||||| ||||||||||||||  |||||  || ||||||||||||||||||||||    
T  13710372 tacattatttaatgaataaatataaaatgttgatttttacttataataatgatc 13710425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 7613411 - 7613359
Alignment:
Q  44 catttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    |||||||||||| |||||||||| || |||||| ||||||||| ||| |||||    
T  7613411 catttaatgaatgaacttaaaaagttgatttttgcttataatagtgaccggag 7613359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 8717776 - 8717716
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||| ||||| | ||||||| |||||| || |||||| |||||||||||||||| |||||    
T  8717776 tacattatttattaaataaacctaaaaagttgatttttgcttataataatgatcgaaggga 8717716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 8717789 - 8717849
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||| ||||| ||||| ||| |||||| || |||||| ||||||||| ||||||||||||    
T  8717789 tacattatttattgaatgaacctaaaaatttgatttttgcttataatagtgatcggaggga 8717849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 13654567 - 13654507
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||| ||| |||||| | ||| ||||||||||||| ||| ||||||||    
T  13654567 tacatcatttattgaatgaacctaaaaagtcaatatttacttataatagtgaccggaggga 13654507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 25694197 - 25694257
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| ||| || ||| || |||||| ||||||||| ||| ||||||||    
T  25694197 tacatcatttaatgaatgaacctagaaagttgatttttgcttataatagtgaccggaggga 25694257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 34820683 - 34820647
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttt 75  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  34820683 tacatcattaaatgaatgaacttaaaaaattaatttt 34820647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 36864499 - 36864443
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    |||| |||||| | ||| ||| ||||||||||| |||||||||||||| ||||||||    
T  36864499 tacaccatttattcaatgaacctaaaaaattaacttttacttataatagtgatcgga 36864443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 4e-16; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 42 - 93
Target Start/End: Original strand, 1597274 - 1597325
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    ||||||||||||||||| |||||| |||||||||||||||||||||||||||    
T  1597274 atcatttaatgaataaatttaaaatattaatttttacttataataatgatcg 1597325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 42 - 93
Target Start/End: Complemental strand, 1751160 - 1751109
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    |||||||||| |||||| |||||| |||||||||||  ||||||||||||||    
T  1751160 atcatttaataaataaatttaaaatattaatttttatatataataatgatcg 1751109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 48083562 - 48083515
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||||||| ||| ||||| |||||||||| |||||||||    
T  48083562 tacatcatttaatgaatgaacctaaaatattaatttttgcttataata 48083515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 9902626 - 9902572
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    ||||||||||||| ||| ||| |||||| ||||||||||||||||| | ||||||    
T  9902626 tacatcatttaataaattaacctaaaaagttaatttttacttataacagtgatcg 9902572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 27864501 - 27864559
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||||||| ||||| ||| ||||||||| ||||||| |||||||| ||| ||||||    
T  27864501 tacatcatttattgaatgaacctaaaaaattgatttttatttataatagtgaccggagg 27864559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 85
Target Start/End: Original strand, 35544615 - 35544661
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataat 85  Q
    |||| ||||||||||||||| |||||| || ||||||||||||||||    
T  35544615 tacaccatttaatgaataaatttaaaatataaatttttacttataat 35544661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 3549861 - 3549914
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatc 92  Q
    ||||| ||||||||||| || ||||||  ||||||||| |||||||||||||||    
T  3549861 tacattatttaatgaatgaatttaaaatgttaatttttgcttataataatgatc 3549914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 80
Target Start/End: Complemental strand, 13877043 - 13877002
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttactt 80  Q
    |||||||||||||||||||| ||||||  |||||||||||||    
T  13877043 tacatcatttaatgaataaatttaaaatgttaatttttactt 13877002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 42 - 95
Target Start/End: Complemental strand, 46412758 - 46412705
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    |||||||||||||| ||  ||||| |||||||||| ||||||||| ||||||||    
T  46412758 atcatttaatgaatgaatctaaaatattaatttttgcttataatagtgatcgga 46412705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 84
Target Start/End: Original strand, 48129513 - 48129554
Alignment:
Q  43 tcatttaatgaataaacttaaaaaattaatttttacttataa 84  Q
    ||||||| ||||||||| |||||||||||||||| |||||||    
T  48129513 tcatttattgaataaacctaaaaaattaatttttgcttataa 48129554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 50308710 - 50308767
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||||||||||||||| |||||||||  ||  ||||| ||||||||| |||||||||    
T  50308710 tacatcatttaatgaatgaacttaaaatgttggtttttgcttataatagtgatcggag 50308767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Original strand, 6340655 - 6340703
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    |||||||| ||||| ||| |||||| ||||||||| |||||||||||||    
T  6340655 atcatttattgaatgaacctaaaaagttaatttttgcttataataatga 6340703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 9676024 - 9675964
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||| ||||| | ||| ||| |||||| ||||||||||||||||||| ||| ||||||||    
T  9676024 tacattatttattaaatgaacctaaaaagttaatttttacttataatagtgaccggaggga 9675964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 10256851 - 10256910
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||| |||||||||  | ||||||| ||||||||| ||||||||||||    
T  10256851 tacatcatttattgaatgaacttaaaagttaaattttt-cttataatagtgatcggaggga 10256910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 102
Target Start/End: Original strand, 27687942 - 27687990
Alignment:
Q  54 ataaacttaaaaaattaatttttacttataataatgatcggagggataa 102  Q
    ||||||||||||| ||||||||| ||||||| || ||||| ||||||||    
T  27687942 ataaacttaaaaagttaattttttcttataacaaggatcgcagggataa 27687990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 99
Target Start/End: Complemental strand, 29043508 - 29043452
Alignment:
Q  43 tcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||| ||||| ||| |||||| || |||||| ||||||||||||| ||||||||    
T  29043508 tcatttattgaatgaacctaaaaagttgatttttgcttataataatgagcggaggga 29043452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 39940568 - 39940628
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||| ||||| ||||| ||  |||||| | ||||||||||||||||| ||||||||||||    
T  39940568 tacattatttattgaatgaatctaaaaagtaaatttttacttataatagtgatcggaggga 39940628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 83
Target Start/End: Complemental strand, 41007735 - 41007691
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttata 83  Q
    |||||||||||||||||||| |||||| ||| |||||| ||||||    
T  41007735 tacatcatttaatgaataaatttaaaatattgatttttgcttata 41007691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 17986252 - 17986192
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| |||||| ||| || |||||||||||||||||||| ||||||||    
T  17986252 tacatcatttaatgaatgaacttataaagttgatttttacttataataatgaccggaggga 17986192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 26998751 - 26998802
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    ||||||||||||| |||||| ||||||| |||||||||||||||||||||||    
T  26998751 tacatcatttaataaataaatttaaaaagttaatttttacttataataatga 26998802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 17986276 - 17986333
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||||||||||||||| ||| |||||| || |||||||||||||||| |||||||||    
T  17986276 tacatcatttaatgaatgaacctaaaaagttgatttttacttataatagtgatcggag 17986333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 27502959 - 27502902
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||||||||||||||| || ||||||  ||||||||| ||||||||| |||||||||    
T  27502959 tacatcatttaatgaatgaatttaaaatgttaatttttgcttataatagtgatcggag 27502902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 17871821 - 17871761
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| ||| |||||| || |||||| ||||||||||||| | ||||||    
T  17871821 tacatcatttaatgaatgaacctaaaaagttgatttttgcttataataatgaccagaggga 17871761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 90
Target Start/End: Original strand, 14041874 - 14041925
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    ||||| ||||| ||||||||| |||||||| |||||||| ||||||||||||    
T  14041874 tacattatttattgaataaacgtaaaaaatcaatttttaattataataatga 14041925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 17871845 - 17871892
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||||||| ||| ||||||||| |||||| |||||||||    
T  17871845 tacatcatttaatgaatgaacctaaaaaattgatttttgcttataata 17871892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 26998727 - 26998680
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||| ||||||| ||||||||||||||||  ||||||||    
T  26998727 tacatcatttaataaataaacctaaaaaattaatttttgtttataata 26998680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 37288615 - 37288556
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaatt-aatttttacttataataatgatcggagg 97  Q
    ||||||||||||||||| ||| ||||||||| | ||||||||||||||| ||||| ||||    
T  37288615 tacatcatttaatgaatgaacctaaaaaattgattttttacttataatagtgatctgagg 37288556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 1897916 - 1897858
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||| ||||||||||||||  ||||| ||| |||||| ||||||||||||| ||||||    
T  1897916 tacattatttaatgaataaatataaaatattgatttttgcttataataatgaccggagg 1897858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 92
Target Start/End: Original strand, 18603540 - 18603593
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatc 92  Q
    ||||||||||||| ||||||  |||||  |||||||||| ||||||||||||||    
T  18603540 tacatcatttaattaataaatctaaaatgttaatttttaattataataatgatc 18603593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 37 - 86
Target Start/End: Complemental strand, 31271592 - 31271543
Alignment:
Q  37 actacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||| ||| | ||| | ||||||||||||||||||||||||    
T  31271592 actacatcatttattgattgaacctgaaaaattaatttttacttataata 31271543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 91
Target Start/End: Original strand, 3225862 - 3225914
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgat 91  Q
    ||||||||||||||||| |||  |||| ||| |||||| ||||||||||||||    
T  3225862 tacatcatttaatgaatgaaccaaaaatattgatttttgcttataataatgat 3225914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Complemental strand, 36308572 - 36308536
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttt 75  Q
    |||||||||||||||||||||||||||| | ||||||    
T  36308572 tacatcatttaatgaataaacttaaaaagtgaatttt 36308536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 43 - 90
Target Start/End: Complemental strand, 17214249 - 17214202
Alignment:
Q  43 tcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    |||||||||||||||| |||||||||| ||||||| ||||||||||||    
T  17214249 tcatttaatgaataaatttaaaaaattgatttttaattataataatga 17214202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 32254903 - 32254962
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||| ||  ||||| ||||| |||| ||||||||| |||||||||||    
T  32254903 tacatcatttaatgaatgaatctaaaatattaacttttgcttataatagtgatcggaggg 32254962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 10258386 - 10258444
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||||| | ||||| ||  |||||| ||| ||||||||||||||||||||||||||    
T  10258386 tacatcattaattgaatgaatctaaaaagttattttttacttataataatgatcggagg 10258444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Original strand, 29419869 - 29419927
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||||||||||||| ||  |||||  || ||||||||||||||||||||| |||||    
T  29419869 tacatcatttaatgaatgaatctaaaatgttgatttttacttataataatgattggagg 29419927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 12383839 - 12383786
Alignment:
Q  45 atttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||| ||  ||||| |||||||||| ||||||||| |||||||||||    
T  12383839 atttaatgaattaatctaaaatattaattttttcttataatattgatcggaggg 12383786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 100
Target Start/End: Original strand, 24111181 - 24111242
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagggat 100  Q
    ||||||||||| ||||||||  |||||| | || |||||||||||||||||| |||| ||||    
T  24111181 tacatcatttattgaataaatctaaaaattgaacttttacttataataatgaacggatggat 24111242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 8449632 - 8449576
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    ||||||||||| ||||||||   |||| |||||||||| ||||||||| ||||||||    
T  8449632 tacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatcgga 8449576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 8458436 - 8458380
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    ||||||||||| ||||||||   |||| |||||||||| ||||||||| ||||||||    
T  8458436 tacatcatttattgaataaatccaaaatattaatttttgcttataatagtgatcgga 8458380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 21096239 - 21096186
Alignment:
Q  45 atttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||  ||||| |||||||||| ||||||||||| |||||||||    
T  21096239 atttaatgaataaatctaaaatattaatttttgcttataataataatcggaggg 21096186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Complemental strand, 30457789 - 30457742
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||| ||||| |||||||| ||| |||||||||||||||||    
T  30457789 tacatcatttattgaatgaacttaaagaatcaatttttacttataata 30457742  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 96
Target Start/End: Complemental strand, 11602826 - 11602769
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||| ||||||||||| ||| |||||||| || |||||||||||||| ||| |||||    
T  11602826 tacataatttaatgaatgaacctaaaaaatcaacttttacttataatagtgaccggag 11602769  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 39 - 88
Target Start/End: Complemental strand, 28752137 - 28752088
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataat 88  Q
    ||||||||||||||||| || ||||||| |||| |||| |||||||||||    
T  28752137 tacatcatttaatgaatgaaattaaaaagttaacttttgcttataataat 28752088  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 86
Target Start/End: Original strand, 28752164 - 28752208
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    |||||||||||||| ||  |||||||||||||||| |||||||||    
T  28752164 atcatttaatgaatgaatgtaaaaaattaatttttgcttataata 28752208  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000003; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 96
Target Start/End: Original strand, 36571456 - 36571513
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggag 96  Q
    ||||||||||||||||| |||||||||| | || |||||||||||||| ||| |||||    
T  36571456 tacatcatttaatgaatgaacttaaaaagtcaacttttacttataatagtgaccggag 36571513  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 34327590 - 34327650
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| ||  |||||  |||||||||  |||||||||||||||||||||    
T  34327590 tacatcatttaatgaatgaatctaaaatgttaatttttgtttataataatgatcggaggga 34327650  T

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Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 40639791 - 40639850
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||| || ||||||  ||||||||| ||||||||| ||| |||||||    
T  40639791 tacatcatttaatgaatgaatttaaaatgttaatttttgcttataatagtgaccggaggg 40639850  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 33371923 - 33371865
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||| ||| |||||||| |||||||||||| |||| |||||||  |||||||||||    
T  33371923 tacatcaattattgaataaatttaaaaaattaactttttcttataaatatgatcggagg 33371865  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Original strand, 40639877 - 40639931
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    |||||||||||||||||||| ||||||  || |||||| ||||||||| ||||||    
T  40639877 tacatcatttaatgaataaatttaaaatgttgatttttgcttataatagtgatcg 40639931  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 95
Target Start/End: Original strand, 48545631 - 48545681
Alignment:
Q  45 atttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    ||||| ||| ||||||||||||||  ||||||| |||||||||||||||||    
T  48545631 atttattgagtaaacttaaaaaatagatttttatttataataatgatcgga 48545681  T

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Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 8256908 - 8256965
Alignment:
Q  41 catcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||| ||||| || ||||||| | |||||||| |||||||| |||||||||||    
T  8256908 catcatttattgaatgaatttaaaaagtgaatttttatttataatactgatcggaggg 8256965  T

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Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 90
Target Start/End: Complemental strand, 24270508 - 24270460
Alignment:
Q  42 atcatttaatgaataaacttaaaaaattaatttttacttataataatga 90  Q
    |||||||||| |||||| |||||| ||| |||||| |||||||||||||    
T  24270508 atcatttaatcaataaatttaaaatattgatttttgcttataataatga 24270460  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 98
Target Start/End: Complemental strand, 35511812 - 35511768
Alignment:
Q  54 ataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    |||||||||||| ||  |||||||||||||| |||||||||||||    
T  35511812 ataaacttaaaatatagatttttacttataacaatgatcggaggg 35511768  T

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Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 51 - 87
Target Start/End: Original strand, 40169094 - 40169130
Alignment:
Q  51 tgaataaacttaaaaaattaatttttacttataataa 87  Q
    ||||| |||||||||||||||||||| ||||||||||    
T  40169094 tgaatgaacttaaaaaattaatttttgcttataataa 40169130  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 7650248 - 7650188
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||||||||| |||||||||| || |||||| |||| |||| |||||| |||||    
T  7650248 tacatcatttaatgaatgaacttaaaaagttgatttttgcttacaatagtgatcgaaggga 7650188  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 23143568 - 23143628
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||||||| |||||| || |||||| ||||||||| ||| ||||||||    
T  23143568 tacatcatttattgaataaacctaaaaagttgatttttgcttataatagtgaccggaggga 23143628  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 23555358 - 23555418
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||||||| |||||| || |||||| ||||||||| ||| ||||||||    
T  23555358 tacatcatttattgaataaacctaaaaagttgatttttgcttataatagtgaccggaggga 23555418  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 86
Target Start/End: Original strand, 15446860 - 15446907
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataata 86  Q
    ||||||||||||| ||| ||| |||||||| |||||||||||||||||    
T  15446860 tacatcatttaataaatgaacctaaaaaatgaatttttacttataata 15446907  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 23378024 - 23378083
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||| ||| ||  ||||| |||||||||| ||||||||||||| |||||||    
T  23378024 tacatcatttaataaatgaatctaaaatattaatttttgcttataataatgaccggaggg 23378083  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 11093588 - 11093530
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||||||||||||| ||  ||||| ||| |||||||||||||||| ||||| ||||    
T  11093588 tacatcatttaatgaatcaatctaaaatattgatttttacttataatagtgatcagagg 11093530  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 93
Target Start/End: Complemental strand, 45472468 - 45472414
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcg 93  Q
    ||||||||||| ||||| || ||||||| | ||||||||||||||||| ||||||    
T  45472468 tacatcatttattgaatgaatttaaaaagtaaatttttacttataatagtgatcg 45472414  T

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Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 39 - 97
Target Start/End: Complemental strand, 45473135 - 45473077
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    ||||||||||||||||| ||  |||||  |||||||||| |||||||||||| ||||||    
T  45473135 tacatcatttaatgaatgaatctaaaattttaatttttaattataataatgaccggagg 45473077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 41 - 94
Target Start/End: Original strand, 6648171 - 6648224
Alignment:
Q  41 catcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgg 94  Q
    ||||||||||||||| ||| ||||| ||| ||||||  ||||||||||||||||    
T  6648171 catcatttaatgaatgaacataaaatattgatttttgtttataataatgatcgg 6648224  T

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Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 45 - 98
Target Start/End: Original strand, 26229533 - 26229586
Alignment:
Q  45 atttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||| ||| |||||||| ||||||| ||||||||| ||| |||||||    
T  26229533 atttaatgaatgaacctaaaaaatgaatttttgcttataatagtgaccggaggg 26229586  T

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Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Complemental strand, 5559487 - 5559427
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    |||| |||||||| ||| ||  ||||||||| |||||||||||||| | ||||||||||||    
T  5559487 tacaacatttaataaatgaatctaaaaaattgatttttacttataacagtgatcggaggga 5559427  T

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Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 95
Target Start/End: Complemental strand, 8266371 - 8266315
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcgga 95  Q
    |||| |||||||||||| |||||| ||||| |||||||| |||||||| ||| ||||    
T  8266371 tacaacatttaatgaatgaacttagaaaatgaatttttatttataatagtgaccgga 8266315  T

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Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 25 - 97
Target Start/End: Complemental strand, 32226648 - 32226576
Alignment:
Q  25 tatagaccatatactacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggagg 97  Q
    |||||||||||||||  || ||||||| ||||||  ||||| |||||| |||| |||||||| |||| |||||    
T  32226648 tatagaccatatactttattatttaataaataaatctaaaatattaatgtttatttataatagtgattggagg 32226576  T

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Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 75
Target Start/End: Original strand, 32514950 - 32514986
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttt 75  Q
    ||||||||| ||| |||||||||||||||||||||||    
T  32514950 tacatcattaaataaataaacttaaaaaattaatttt 32514986  T

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Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 39 - 99
Target Start/End: Original strand, 41824342 - 41824402
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggga 99  Q
    ||||||||||| ||||| ||| |||||| | |||||||||||||| || ||| ||||||||    
T  41824342 tacatcatttattgaatgaacctaaaaagtcaatttttacttatagtagtgaccggaggga 41824402  T

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Target: scaffold0149 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 39 - 98
Target Start/End: Original strand, 24688 - 24747
Alignment:
Q  39 tacatcatttaatgaataaacttaaaaaattaatttttacttataataatgatcggaggg 98  Q
    ||||||||||||||||| ||  ||||| |||||||||| ||||||||| ||| |||||||    
T  24688 tacatcatttaatgaatgaatctaaaatattaatttttgcttataatagtgaccggaggg 24747  T

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