View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11098_low_18 (Length: 223)

Name: NF11098_low_18

Description: NF11098

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF11098_low_18

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 141; Significance: 4e-74; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 141; E-Value: 4e-74

Query Start/End: Original strand, 32 - 223

Target Start/End: Complemental strand, 35368095 - 35367903

Alignment:

Q	32	tagactacttttttgtt-aaggagaaactagactacctataaagcattaataacttataacataactaaacccttaagccttttctaagttactggggag	130	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35368095	tagactacttttttttttaaggagaaactagactacctatgaagcattaataacttataacataactaaatccttacaccttttctaagttactggggag	35367996	T

Q	131	tggggagtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaagacaattagggtttttacgaagcc	223	Q
		\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	35367995	tggagagtgacctctgtgtcacatctataatcatagagagattgagagaacagttagagcgacacagaggacaattggggtttttacgaagcc	35367903	T

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Target: chr3; HSP #2

Raw Score: 43; E-Value: 0.000000000000001

Query Start/End: Original strand, 117 - 223

Target Start/End: Complemental strand, 35374950 - 35374844

Alignment:

Q	117	aagttactggggagtggggagtgacctctctgtcacatctataatcatagagggattgagagaacagttagagcgacacaaaagacaattagggttttta	216	Q
		\|\|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\| \| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\| \|\|\| \| \|\|\|\|\|\|\|\| \| \| \|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|
T	35374950	aagttaccggggagtgaggagtgatctctccggcacatctataattatagagtgattgagatgacaactggagcgacatagaggacaattaggtttttta	35374851	T

Q	217	cgaagcc	223	Q
		\|\|\|\|\|\|\|
T	35374850	cgaagcc	35374844	T

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