View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11098_low_3 (Length: 541)
Name: NF11098_low_3
Description: NF11098
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11098_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 496; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 523
Target Start/End: Original strand, 4360328 - 4360853
Alignment:
| Q |
1 |
tggagattgtaagttgttactaagttcaattcaacttttgtcatgttttctgtgtttggagattgatatattcatcacattttttgtttatatcttatca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
4360328 |
tggagattgtaagttgttactaagttcaattcaacttttgtcatgttttctgtgtttggagattgatatattcatcacatttattgtttatatcttatca |
4360427 |
T |
|
| Q |
101 |
tatctcaacaaaaaagaaaggaaatattgtgcttttccagcccctgtactt---agtatagtagacggacgatatctaggatggagaagtgtctcatatg |
197 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
4360428 |
tatctcaacaataaagaaaggaaatattgtgcttttccagcccctgtacttcttagtatagtagtcggacgatatctaggatggagaagtgtctcatatg |
4360527 |
T |
|
| Q |
198 |
atctacgggggaccaaagttgatgatacttttattcctcctcgtgaccgagaaggtgatccaattaatgttttaatcggcgccagttcagcaaaaaacaa |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4360528 |
atctacgggggaccaaagttgatgatacttttattcctcctcgtgacagagaaggtgatccaattaatgttttaatcggcgccagttcagcaaaaaacaa |
4360627 |
T |
|
| Q |
298 |
gaaaaataaatattagcgcctcaaaactcaactcagtttatgttcattttctacggataaagtccgtgtctcaatcttaagacgtggaggaccttcaact |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4360628 |
gaaaaataaatattagcgcctcaaaactcaactcagtttatgttcattttctacggataaagtccgtgtctcaatcttaagacgtggaggaccttcaact |
4360727 |
T |
|
| Q |
398 |
tctacttataaaacgtggaggcgttgattgtcatcggaattttgagcgattttctagcatcagtccatcatagatcacatgagacactcttgcaccctaa |
497 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4360728 |
tctacttataaaacgtggaggcgttgattgtcatcggaattttgagcgattttctagcatcagtccatcatagatcacatgagacactcttgcaccctaa |
4360827 |
T |
|
| Q |
498 |
gtttgggaagtctttgtggattgaag |
523 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
4360828 |
gtttgggaagtctttgtggattgaag |
4360853 |
T |
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Back To:
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Target: chr7 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 290 - 330
Target Start/End: Complemental strand, 45101982 - 45101942
Alignment:
| Q |
290 |
aaaaacaagaaaaataaatattagcgcctcaaaactcaact |
330 |
Q |
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||||||||| |||||||||||||| |||| ||||||||||| |
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| T |
45101982 |
aaaaacaaggaaaataaatattagtgccttaaaactcaact |
45101942 |
T |
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